Arep027004.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- -
- Assembly
- GCA_963576875.1
- Location
- OY756240.1:6959610-6966079[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00031 0.027 15.8 1.2 1 23 21 43 21 43 0.98 2 15 1.1e-05 0.00097 20.4 1.6 2 23 50 71 49 72 0.95 3 15 0.3 26 6.4 0.2 1 23 97 120 97 120 0.96 4 15 0.0064 0.55 11.7 2.2 2 23 127 149 126 149 0.90 5 15 0.0017 0.14 13.5 0.3 2 23 169 190 168 190 0.95 6 15 0.15 13 7.4 1.0 2 23 221 243 221 243 0.96 7 15 0.012 1 10.8 0.6 2 23 250 271 249 271 0.95 8 15 0.00042 0.037 15.4 1.1 1 23 277 299 277 299 0.98 9 15 1.1e-05 0.00097 20.4 1.6 2 23 306 327 305 328 0.95 10 15 0.53 46 5.6 0.3 1 23 351 374 351 374 0.94 11 15 7.6e-05 0.0066 17.7 1.4 2 23 423 445 422 445 0.96 12 15 0.76 66 5.2 2.9 1 23 476 499 476 499 0.96 13 15 0.00016 0.014 16.8 0.1 2 23 506 527 505 527 0.97 14 15 3.2e-06 0.00028 22.1 0.7 1 23 533 555 533 555 0.98 15 15 0.00076 0.066 14.6 0.7 2 23 562 583 562 584 0.94
Sequence Information
- Coding Sequence
- ATGTTCTTTGATATAAAATCGTTGACGAGACATTTGGTGAAACACAACCCTGTGAAGATATTCGAGTGTCGGTTTTGCAAGAAGAAGTTCCCCAGGGTGAATGCTTTGACTCAGCATGTTAAAATACATACGGGGGACAAGAGGAAGGTGTGCACGTTATGTGGTGAGAGGTTTGTGCAGAAAGCGAGCTTGAACTACCATATGATGAAGCATCATCCGGAAGCTTGTGCAACCGAAGATCGCCTAAAGAAGTACTACACCGAACACCGACAAAACAATAGCTGCTCATTCACCTGCAACTTATGTGACGTGGAGAAGCCGCGCAAATACCTTGTCCAAGACCACATAAAGATTGTACATTTAAATCAACGCGATATCAAATGTAATGTCTGCGAAGAAATGTTTAAACAGAGAGAtcagaaaaataaacatttagtaGAATGCCATGGAATTGAGAGATTTAAGATAAATGGCAAGATGACGACTAGACCGGCGCAGAGAGTTACATGTGACGAATGCAAAAAAGATTTTCCTGGTAAAGTATTTTTGGTTCGTCATATGTTTCTTCACAGAAAATATAAATGCCCAGATTGTCCAGTTTTACTCTGCAAAGATCCCTTATTTAGACATAGAGTACAAGTCCACGGAGCAAATGTGCCCACTTGTGGGGTATGTGGGTTCAAGCACAGGTCACAGGCGGCAGTAATCAAACACCAGAGGAAAGTACATTTGAAAGAAAAGACTATCCCCTGTCCACACTGCGAAGACATGTTCTTCGATTTAACAACGTTGAACAGACATTTGGTGAAACATAACCCTGTGAAGATATACGAGTGTCGGTTTTGCAAGAAGAAGTTCCCCAGGGGGAATGCTTTGAGACAGCATGTTAAAATACATACGGGGGACAAGAGGAAGGTGTGCACGTTATGTGGTGAGAGGTTTGTGCAGAAAGCGAGCTTGAACTACCATATGATGAAGCATCATCCGGAAGCTTATGCTGAAGAAGTGTTGGACTTCACGAAGCATACGAACGACGCTGGTAAAGTCACATACAGCTGCGACTTGTGcgacataaaaagaaaaaacttgagcCGTATACGAGACCACGTGTTAGTATaccattacaaaaaatacttaatcaaGTGCCTTTGCTGCGAAGAAACATTCAGAACGCGGAAGATCATGTTCAGACACCTACTTAGAAGCCACAGCATGGAGCAAGCTAAAGTTGGTGGAGTATACGTGCCCGTACCAGCTCAAAGAGTCTCATGCGAAACGTGTAAAAAAGAATTTCGTAATAAGGACAGACTGAAAGATCATATATCTACGAGCCACAATTTTGTGAAATGCTCCATATGTCACGCGATGGTATTGAGCGAGAAAAGAGGTATGTTACGCCACAAAGCTGAAGTTCACAACATTATGCACTCTTGTGGCATTTGCGACTACAAGCACATGACGAGAAGTAGCGTGATCCTACACCAAAGAAAGGTACATTTGAAAGAGAGGAATGTCTCTTGTACGTTGTGTGGAGCGAAATTCTACGGGCCTCCTCAACTCAAGAAACATATGATCCGGCATAATCCGGTGAAGAAGTACGAGTGTTCAGTTTGTAAGAAAATGTATCCGAGGCAGAACACTCTGAATGAGCACATGAAGATACACCTGGAAGACAAGAGGAGGGTGTGTCGGATTTGCGGCGAGAAGTTCGTGCAGACGGCTAGCTTGAGCTATCACATGGGGAAGCACCACCCTGATGCTTGTTGA
- Protein Sequence
- MFFDIKSLTRHLVKHNPVKIFECRFCKKKFPRVNALTQHVKIHTGDKRKVCTLCGERFVQKASLNYHMMKHHPEACATEDRLKKYYTEHRQNNSCSFTCNLCDVEKPRKYLVQDHIKIVHLNQRDIKCNVCEEMFKQRDQKNKHLVECHGIERFKINGKMTTRPAQRVTCDECKKDFPGKVFLVRHMFLHRKYKCPDCPVLLCKDPLFRHRVQVHGANVPTCGVCGFKHRSQAAVIKHQRKVHLKEKTIPCPHCEDMFFDLTTLNRHLVKHNPVKIYECRFCKKKFPRGNALRQHVKIHTGDKRKVCTLCGERFVQKASLNYHMMKHHPEAYAEEVLDFTKHTNDAGKVTYSCDLCDIKRKNLSRIRDHVLVYHYKKYLIKCLCCEETFRTRKIMFRHLLRSHSMEQAKVGGVYVPVPAQRVSCETCKKEFRNKDRLKDHISTSHNFVKCSICHAMVLSEKRGMLRHKAEVHNIMHSCGICDYKHMTRSSVILHQRKVHLKERNVSCTLCGAKFYGPPQLKKHMIRHNPVKKYECSVCKKMYPRQNTLNEHMKIHLEDKRRVCRICGEKFVQTASLSYHMGKHHPDAC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -