Basic Information

Insect: Acrobasis repandana
Gene Symbol: -
Assembly: GCA_963576875.1
Location: OY756240.1:6995140-6998423[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0017 0.15 13.5 0.1 1 23 31 54 31 54 0.98

2 15 0.027 2.3 9.7 1.5 1 23 62 85 62 85 0.94

3 15 1.7e-06 0.00015 23.0 0.5 1 23 104 127 104 127 0.97

4 15 0.2 17 7.0 0.1 2 23 131 152 131 152 0.89

5 15 0.42 37 6.0 0.1 2 23 158 179 158 179 0.92

6 15 0.0044 0.38 12.2 5.7 2 23 182 204 181 204 0.93

7 15 2.2 1.9e+02 3.7 0.2 1 23 207 229 207 229 0.80

8 15 0.11 9.2 7.8 2.9 1 23 234 257 234 257 0.95

9 15 0.00019 0.017 16.5 0.1 2 23 264 285 263 285 0.97

10 15 0.0032 0.28 12.6 5.6 2 23 294 316 293 316 0.93

11 15 0.15 13 7.4 0.2 1 23 319 341 319 341 0.94

12 15 0.16 14 7.3 0.4 2 23 347 369 347 369 0.97

13 15 0.00017 0.015 16.6 0.2 2 23 376 397 375 397 0.96

14 15 4.4e-06 0.00038 21.6 2.0 1 23 403 425 403 425 0.98

15 15 1.5e-05 0.0013 19.9 0.6 2 23 432 454 431 454 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0017	0.15	13.5	0.1	1	23	31	54	31	54	0.98
2	15	0.027	2.3	9.7	1.5	1	23	62	85	62	85	0.94
3	15	1.7e-06	0.00015	23.0	0.5	1	23	104	127	104	127	0.97
4	15	0.2	17	7.0	0.1	2	23	131	152	131	152	0.89
5	15	0.42	37	6.0	0.1	2	23	158	179	158	179	0.92
6	15	0.0044	0.38	12.2	5.7	2	23	182	204	181	204	0.93
7	15	2.2	1.9e+02	3.7	0.2	1	23	207	229	207	229	0.80
8	15	0.11	9.2	7.8	2.9	1	23	234	257	234	257	0.95
9	15	0.00019	0.017	16.5	0.1	2	23	264	285	263	285	0.97
10	15	0.0032	0.28	12.6	5.6	2	23	294	316	293	316	0.93
11	15	0.15	13	7.4	0.2	1	23	319	341	319	341	0.94
12	15	0.16	14	7.3	0.4	2	23	347	369	347	369	0.97
13	15	0.00017	0.015	16.6	0.2	2	23	376	397	375	397	0.96
14	15	4.4e-06	0.00038	21.6	2.0	1	23	403	425	403	425	0.98
15	15	1.5e-05	0.0013	19.9	0.6	2	23	432	454	431	454	0.96

Sequence Information

Coding Sequence: ATGTTGTTTTTTAAAACCAATTTAATTGATGCACTCGAGTCGGCCGCCCTCGCGAACTTCACCGTGCACTCACAGGGCGGAGGGAAGGTATACACCTGCCAAGAATGCGGCTTGAACCTAGAAAGCTTAAGCTTAATCCAAAGCCACATCAAAACCGAACACCTAACACCCGCCAAATCCGACTTCGAGTGCTACGTCTGCCAACAAACCTTCAAATCCCTAGGCCCCAGAAACAGACATCTATTCAAAAACCATGGCTTGAAAGAAGTCAAAATTGAAGGCGGGTACGATGTCCTACCTGCTCAGAAATATACGTGTGGCGAATGCAACAGGGAATTCGCTGATAAACGGGCTTTGACTAAACATATTAGGTTGTATCACAGGATTCGGAAATGTCCGGACTGTCCAGTGGAACTTACAAACAAAGAATTAGCTCGCCATAGATCTGACGTGCATGGAATGAGCATGCCTACGTGTGAGATCTGCGGGTACAAAGCTCTAAAGCCGTCGACGATCATCAGACATCAGTCAGTACATCAGACGACGTGTCACATATGCAAAAAGAATTTTCCTCACAAGAAATCCTTAGTGACCCACAACAGTCGTTATCACAAAACACACAAATGCCAAGATTGTCCAATAGAGCTGCCTAAAGAGGACTTAGCTCTCCACAGAAGTGAGATCCACGGCGTGCTTCCGCATCAATGTGGATTGTGTGGATACAAACACTATGACGAATCTATGATGGTCAGACATCAGCGGCGAGTCCATTTGCAGGAAAAGAATGTCTCGTGCACTATTTGTGACGCCAAGTTTTACAGCCCAGCCACGTTGGGTAAACACATGGTCACACATAATCCGGTTAAGAAACATCAGACGACGTGTCACATATGCAAAAAGAATTTTCCTCACAAAAAATCTTTAGCGACCCACAACAGTCGTTATCACAAAACACACAAATGCCAAGATTGTCCAATAGAGCTGCCTAAAGATGAGTTAGCTCGCCACAGAAATGAAATCCACGGCGTGAATCTACCTCAATGTGGAGTATGTGGATACCAACACGTTGACGAATCTATGATTATCAGACATCAGCGGCGAGTCCATTTGCAGGAAAAGAATGTCTCGTGCACTATTTGTGACGCCAAGTTTTACTACCCGGCCACGTTGAGTAAACACATGGTCAAACATAATCCGGTTAAGAAATTTGAGTGTTCGTTTTGTCAAAAGAAGTTTCCGAGGAAAAGTACGCTACGGGAGCACGTGAAGATACACACAGGGGATAAGCAGAAAGTGTGTAAGATTTGTGACCAGAGGTTTGTGCAGAAGGCCAGCCTGAACTATCATATGGCGAAGTATCACCCGGAAGCTTGTTAG
Protein Sequence: MLFFKTNLIDALESAALANFTVHSQGGGKVYTCQECGLNLESLSLIQSHIKTEHLTPAKSDFECYVCQQTFKSLGPRNRHLFKNHGLKEVKIEGGYDVLPAQKYTCGECNREFADKRALTKHIRLYHRIRKCPDCPVELTNKELARHRSDVHGMSMPTCEICGYKALKPSTIIRHQSVHQTTCHICKKNFPHKKSLVTHNSRYHKTHKCQDCPIELPKEDLALHRSEIHGVLPHQCGLCGYKHYDESMMVRHQRRVHLQEKNVSCTICDAKFYSPATLGKHMVTHNPVKKHQTTCHICKKNFPHKKSLATHNSRYHKTHKCQDCPIELPKDELARHRNEIHGVNLPQCGVCGYQHVDESMIIRHQRRVHLQEKNVSCTICDAKFYYPATLSKHMVKHNPVKKFECSFCQKKFPRKSTLREHVKIHTGDKQKVCKICDQRFVQKASLNYHMAKYHPEAC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00013389;
90% Identity: iTF_00013389;
80% Identity: -