Arep026994.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- topi
- Assembly
- GCA_963576875.1
- Location
- OY756240.1:6902258-6910513[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.065 5.6 8.5 0.9 3 23 21 42 19 42 0.96 2 20 0.00095 0.083 14.3 0.5 1 23 118 141 118 141 0.95 3 20 0.022 1.9 10.0 0.0 2 23 175 197 174 197 0.95 4 20 0.0013 0.11 13.9 1.3 2 23 220 241 219 241 0.97 5 20 8.9e-05 0.0078 17.5 1.5 1 23 245 267 245 267 0.98 6 20 0.064 5.6 8.5 3.5 1 23 272 295 272 295 0.96 7 20 0.0079 0.69 11.4 2.0 1 21 303 323 303 326 0.89 8 20 0.00039 0.034 15.5 3.2 2 23 334 355 333 356 0.95 9 20 0.0044 0.38 12.2 5.5 1 23 362 384 362 384 0.98 10 20 5e-06 0.00044 21.5 0.7 1 23 390 412 390 412 0.99 11 20 2.1 1.9e+02 3.7 0.5 1 9 418 426 418 430 0.84 12 20 0.003 0.26 12.7 0.5 1 23 491 514 491 514 0.92 13 20 0.22 19 6.8 0.1 2 23 540 562 539 562 0.94 14 20 1 89 4.8 2.0 2 23 585 606 584 606 0.94 15 20 0.086 7.5 8.1 1.7 1 20 610 629 610 632 0.94 16 20 0.5 43 5.7 1.6 1 23 637 660 637 660 0.85 17 20 0.00014 0.012 16.9 0.7 2 23 699 721 698 721 0.95 18 20 8.4e-07 7.4e-05 23.9 1.9 1 23 727 749 727 749 0.98 19 20 2e-06 0.00018 22.7 1.9 1 23 755 777 755 777 0.99 20 20 0.00039 0.034 15.5 5.2 1 23 783 806 783 806 0.96
Sequence Information
- Coding Sequence
- atgatCTTACTAAACTCTAATGCTACTATTATTCGTACATACACTGACCTTGGCTTCGGGTGCTACTTCTGTGAACAGCATTTCCCCGAGCCGACGGATCTTAAAGAACACACTTTAACAACGCACATTAACCCAGAGCTAAATTTCTCTAAAGTGTCATTATCAGATTATCGTATAAAAATGGATGTAACGAAATTGAAGTGTGACCAAGACGCGGAATCTAAAAAGTTACCACGCAAAAAGACTGGAAAGATAACCACAAAGTACGAACTTCTGAAGCACCATTTCAATCTGGCGGCGATTCTGCAGTACTCGAATGCAACGATAATTCGCACCCACTGCGGTCTCGGCTACACATGCAACTTCTGCGACTCGGCTTTCCCCTACCCCGCTCAACTAAAAACGCACACCCTACAAACTCATAGCTCCATCACTAGAGTAAACTGCGCGAAAATTCTTGGACTCGGTTTTGGCAGAACAAGCCTCAGCGACTTTATGGTCAAACTTGACATAACAGAATTGCAGTGCATGATTTGCGACCGTTCGATCGAAACCCTCGAAGATTTGATGGAGCATCTCACATCAGTTCACGAAAGAAAACTACATATGGGCTTGAACAACTACTTTTTACCTTTCAAATTTAATAGCGAAGATTTAACATGCTTCATGTGCTCTCAAGTGTACACCACTTTTAAAAAGCTCCAAGAACATATGAATGTCCATTCTATAAACTTTACGTGCCCCGTCTGTAAAGCGCCCTTCATATCTCTTCATCAGCTTCGCAGTCACAAAAGGTCCCACCAAAAAGGGGAGTTCCCGTGCGATTTCTGCTTCAAAGTGTTTCCTACGAATACAAAGAGGAAGTATCATCACAAAGTTGTTCATACTGATTCTAGAGAGCGCTTGTACCGCTGCGCCCACTGTGGTGAAACATTTAGGTATCACAAGGATAAGGAGGTTCATTTGGTGGATGTCCACGGCACTCCGCAACAAAACATCAAGTGTCAGGTTTGCGACCAAGTGTTTTCGTATAGGAAATACTATCAGATTCACTACAAACGCCACCACGAGCTTTCAAGGAGTCATAAATGTACACAGTGTCATATGAGTTTCTTTGGTGCGACTCACTTGGAGGATCACATGGTGACTCATACAAGGGAGAGGAACTTCAAGTGCGAGGTCTGTGGTAAGGCTTTCGGCTTGAAAAAGAACTTGTCATTGCATTTGAGGAGACATAATAACGATCGCAGGTTCCAATGCGAGCATTGTGGCCAAGGTGTCAAAAAAGAGTTGCGCCCCTTGCACCGAGACAAGGTATTCAAAGAGGGAGAAATAAAAAGAACACCTTTCAGAGAAACCGTAAGCGAGAAAAAGGCTAAAAGAGAGGAACTAAAGAAGCATCATGTGAATCTGAGGATAGTTCTGCAGTGTTCAAACGCAACGCCTATTCGATGCTATGGAGGGCTAGGGTACGCTTGCTTCTTCTGCGAGCAGCAGTTCCCGAAACCAGACGATCTTAAAAGACATACAGAAGAATCACATCCTGTTATAAATAATCCTAGGGTTAAGAAACGAGGTCTGGGTGATTATTTTGTTAAGCTAGATATAACTTCGCTGCGATGCAAACTATGCCAGGAAAGCATTGAAGATGTACCTACTTTGATGCGTCATCTCAATGCGGTTCATGATAAAAAGCTATATCTGGATTTAAAAGATTACATACTAGCTTTTAAGTTTGAGAGCGACGAGCTCAAATGTTACATTTGTATGAATTTATTCACGAAATTCAAGAAGCTCCAAGAACATATGAACTCACATTACAGGAATTTCGTTTGCGACGTTTGTGACTTGGGATATGTTAATGAGCGGCATCTTTTAACACATAAGGAGTGTCACGTTCTAGGTACATTCAACTGCAACTTTTGCTCCAAAGTATTCGATACGGATAGGAAGAAGAAATTGCATGAGAAAGCTGTACATAGTCATATATCAAAGAATTTAAATAGATGCGGCTGCTGCAATGAGACTTTCAAGTCTTACCTCGCAAAGCAGAAACACTTAGTAGAAGTACATGGAGTGCCAGCTCTTAAAATCGAATGCCAAGCGTGTGACAAAGTATTTAATAGTAGAAGAATGTTCACCGTTCACATGAAACGGGATCACTTGTTGGAAAGACCCCATAAGTGCGCTGAGTGTGGAAAGGGTTTCTCTAGTTCTTTCACGCTTCAAAATCATATGTTGACGCACACGGGGCTCAAGTTGTTTAAGTGTGAAGTGTGCAAGAAATCGTATGGGAGAAAGAAGACTTTGACGGAGCATATGAGGATACATAATGACGACAGGAGGTTTAAATGTCAGCATTGTGGACAGACTTTCATTCAGAAATGTAGCCTGAAGGGGCACTTGATCTCAAAACATGGGATTATCCTATAA
- Protein Sequence
- MILLNSNATIIRTYTDLGFGCYFCEQHFPEPTDLKEHTLTTHINPELNFSKVSLSDYRIKMDVTKLKCDQDAESKKLPRKKTGKITTKYELLKHHFNLAAILQYSNATIIRTHCGLGYTCNFCDSAFPYPAQLKTHTLQTHSSITRVNCAKILGLGFGRTSLSDFMVKLDITELQCMICDRSIETLEDLMEHLTSVHERKLHMGLNNYFLPFKFNSEDLTCFMCSQVYTTFKKLQEHMNVHSINFTCPVCKAPFISLHQLRSHKRSHQKGEFPCDFCFKVFPTNTKRKYHHKVVHTDSRERLYRCAHCGETFRYHKDKEVHLVDVHGTPQQNIKCQVCDQVFSYRKYYQIHYKRHHELSRSHKCTQCHMSFFGATHLEDHMVTHTRERNFKCEVCGKAFGLKKNLSLHLRRHNNDRRFQCEHCGQGVKKELRPLHRDKVFKEGEIKRTPFRETVSEKKAKREELKKHHVNLRIVLQCSNATPIRCYGGLGYACFFCEQQFPKPDDLKRHTEESHPVINNPRVKKRGLGDYFVKLDITSLRCKLCQESIEDVPTLMRHLNAVHDKKLYLDLKDYILAFKFESDELKCYICMNLFTKFKKLQEHMNSHYRNFVCDVCDLGYVNERHLLTHKECHVLGTFNCNFCSKVFDTDRKKKLHEKAVHSHISKNLNRCGCCNETFKSYLAKQKHLVEVHGVPALKIECQACDKVFNSRRMFTVHMKRDHLLERPHKCAECGKGFSSSFTLQNHMLTHTGLKLFKCEVCKKSYGRKKTLTEHMRIHNDDRRFKCQHCGQTFIQKCSLKGHLISKHGIIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -