Arep029381.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- -
- Assembly
- GCA_963576875.1
- Location
- OY756243.1:7241643-7270103[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.011 0.96 10.9 2.3 1 23 287 309 287 309 0.97 2 24 0.00034 0.029 15.7 4.2 1 23 312 334 312 334 0.98 3 24 0.37 33 6.1 3.0 1 23 340 361 340 361 0.97 4 24 5.9e-05 0.0051 18.1 2.9 1 23 367 389 367 389 0.98 5 24 0.0032 0.28 12.6 8.0 1 23 395 417 395 417 0.97 6 24 0.031 2.7 9.5 0.1 1 22 422 443 422 443 0.96 7 24 7.2e-06 0.00063 21.0 3.1 1 23 477 499 477 499 0.99 8 24 0.0048 0.42 12.1 1.1 1 23 505 527 505 527 0.94 9 24 0.004 0.35 12.3 4.3 1 23 533 555 533 555 0.97 10 24 1.9e-05 0.0016 19.7 2.9 3 23 563 583 561 583 0.97 11 24 0.00094 0.082 14.3 0.8 1 23 618 640 618 640 0.93 12 24 0.00068 0.059 14.8 6.0 1 23 646 668 646 668 0.99 13 24 0.0025 0.22 13.0 0.6 1 23 674 696 674 696 0.98 14 24 2.1e-06 0.00019 22.6 0.8 1 23 721 743 721 743 0.99 15 24 0.0084 0.73 11.3 7.1 1 23 749 771 749 771 0.98 16 24 0.00021 0.019 16.3 4.2 1 23 777 799 777 799 0.98 17 24 4.9e-06 0.00043 21.5 3.7 1 23 813 835 813 835 0.95 18 24 0.00077 0.067 14.6 2.2 1 23 841 863 841 863 0.98 19 24 0.00027 0.024 16.0 0.4 1 23 869 892 869 892 0.93 20 24 9.2e-05 0.008 17.5 0.1 2 23 916 937 915 937 0.96 21 24 3.3e-08 2.9e-06 28.3 3.6 1 23 943 965 943 965 0.98 22 24 1.6e-05 0.0014 19.9 2.1 1 23 971 993 971 993 0.98 23 24 5.6e-05 0.0049 18.2 3.3 1 23 999 1021 999 1021 0.98 24 24 0.021 1.8 10.1 3.9 1 23 1027 1049 1027 1049 0.98
Sequence Information
- Coding Sequence
- ATGCCTCAAGCGTCTATATGTCGAATGTGTCTGGTCACAGACGTCCAGATGGTTGTTATTGCCGGCACGCCTTTGCAGTTTCTTTATGAAAAAATCACTGAAGCAGAGTTGCTGGAAAACATGAAGCCTGTAGCAGCGTGCTACATTTGCCACGCCATGCTGCGGAGGTGCCAGAACTTCATCACTAAGTCTGTCAGAGCAGACGAGCTGCTGACAGACTTTCTGATAAACAATAAGCTAACCGTAAAAGCTGTAGCCCGCATCGACCGCAAGGCGTACAATCTGAATCACACCCTGGGCACCAAAGTGGAATGCCACGACAACACTCCAAGTGAAGAGGATGATGCGCCTAAAGTGAAGCAGGAGACAAGCTTCGAGTTTGTTGGAGACGGGGACCATGATATGGACTTTGAAGACCATACTGAATTCCCACTCAACGAGCCCGTGGTGGAGATAAACGAGAAAACATTAGTGCAGCCTGAAGCGGAGTATTTAGAGATTCAGTTTATGAAGGAGGAGAAGGAACCAATAGTATCCGATGGAGACGACAACCGCGACGTGGATTCCGAAGACGAACAGCCTCTGACTAAAGTCAAGGCAGCAAGACCTGGCAGACCTGGCAGACCAGCCAAACGGAAGAATGACGACGAAGACTGGAAGCCGGACACTGGGGAACTGAAGCAGGCCAATGAGGAACTGAAGCAGGAGCCGGTTGAGAAGAAACCCAAGAAGCAAGGGCCGAAGCCGAAGAAACGTAAAGCGAAGAATCTAAAAATTATACAAGGCGAAGCTACAATCACGGCAATCAAAAGGATCCACTCTCTAGAACGCTTAGTCCTGCAAAGAGGAGAAAAAAGATTCGTGTGCCAGTTCTGTAAAAAAGTATTACGATACAAAACACTAATGCAGACTCATTTGAAGGAGCACAGACCGTACGAATGTGACGTATGCCACAAGAGGTTCAACAGGACGTATCACGTGCGTGTTCATGTGGAAACGCACACAGACGAGAAACCGTTCGAATGTGACATATGTCACCTTAAACTTCGAGGGACTTCTTTTAAgacacatttgagaacgcacaccgGCGAGAAAAGGTATCAGTGTTACGTGTGCGGGAAGAGGTTCCATCAgagtaacaatataaaaagaCATCTTTTGATACATTCCGGCGAGATGCCGCATGAGTGCGACGTGTGCCATCGGAGGTTTAATCAGTTGTGTAATTTAAGAACTCATGTAAAGAAGCACACTGAGAAATGTTTCGAGTGCGATGTTTGTGGGAGTAAAATTGGTGACAAGAAGAGCTTAAGAATACATATTAAAACACAATGTGGCGTCGTCCCAAAGATACAGATGTCCGAAGATTTGATTAAATCGAAAAAAATACTGTCCCTCGAATACGTTTCGATAAACAACCGGAGGCGGTACAGATGCCAATTTTGTCAGAAAGTATTTGCTAACAGGGATCATATGCGCGCTCACCTAAGAATGCATACGGGCGAGAAACCATACAATTGCATTTACTGCGCCGCAAGTTTCGGTAGGGTTTATCATTTGAAAAGGCATATAAGGATACACACGGGTGAGAAACCTCATCAGTGTGAGTTCTGCATTGCCAGCTTCAGTCGCCTCTACCATCTTAAAAGGCATATGGTTTCACACGAGAGCGAAGCGCCTTACGGATGTAATGTCTGCCATCGGAGGTTCAAACGCgaagacaatttaaaaacacATCTCAAAATTCATAACAAAGATAAAGACGCAGTTCAAGTTAAGGCTGATTATAAAACTATTAAGACTGAATCGGTGACAGCGTTGCCTCACGATGTTAGCCAAGATATAAAACCTCATGTCTGCGTCGAGTGTGGCGCTGCGTTCAGTCAATTCAAACAGTTGAAAAAACATTCGATATTACACACTGGCGAGCCTGTCTACGAATGTGATTATTGTCACCGCACTTACCCCAAAAAGTGTTATTTGAGAGTACACATACAGAAACATTTGGACGATAAGAAGTACGAATGCGACATATGCCGGCTGAAGTTTTCTAAACAAGAAATGTTGGACGAACATTTCAAAGTCCATGCCGTTCAGATTAAATCTGAAAATGCTAACGTCAGTAAGAGTGAGACAGAAGACGGTGAAATGAAGAAGTGTTACCAATGCAACGACTGCGGTGCTCGATTCGCACGGAACTACCGCCTGAAAAGACATTTGCTCATGCACACTGGCGACGCGAGCTACGAATGCGTGTTCTGCCATTGCAAATTTAATCAAAAGATCAATCTGAGGATGCATCTCAAGAAACACACTGGTCAGAGAACTCACAAATGTGATCTGTGTCAACGTAGATTCCCTGATAAAGACAAATATGAAAGGCATTTGAAAAAGCACGTGGATGGAAAGCCCTTGAGCATATACGACCTGAAACCATTCCTTTGCAACCAATGTGGGACTAGATTCAGTAGACGCTACCATTTGAACCGACATCTAGCAACACACAGCGGACAGCCGATCCACAAGTGTGATTTTTGCCCCTACGTATTCAATATAAGGAACGATTTGAGACTGCATCTTAAAACGCATGCTATGGAGAAGAAATACGCATGTGAAGTTTGCGATCGTAGGTTTAGAGCGAAGAAGTCTTTAGAGAAACACGTACTGGCAAAGCATAACGACGATCCGAATGtcgagaaaaaagaaaaagttaaaaagccaccgaaAAGTGACACTGAAGCGGTTGTATGCAACGTCTGTGGCATTGTTTTGAATAGAAAATACGATTTGAAGAGGCATTTGTTACAGCATTCCGGTGAAAGACCGTTTGAATGTAACATTTGTCATAAGAGTTTCACTCAGAATAGTTCTTTGACAATACATATGAGGCGGCACACTGGTTACAAACCGTTCGAGTGTACCATATGCCAGTACAAGTTCTACGAGAAGAGTAATTTGACTATACACATGACGAAGCACTCTGACGAGAAACCGCACCAGTGTGACGTTTGTAATCGTAAATTCAAAAGGAAGGATGTGTTGACTATGCATCAGAAAATACATTCTGGCGAGAAACCTCACGAATGTTACATCTGCCTGCGCAGGTTTGCTCTTAAGAAAACCATGAAGAAACATTTGAATACACATAAGGTAGAAAAGGTCGAGAATACTTTCGTGTAA
- Protein Sequence
- MPQASICRMCLVTDVQMVVIAGTPLQFLYEKITEAELLENMKPVAACYICHAMLRRCQNFITKSVRADELLTDFLINNKLTVKAVARIDRKAYNLNHTLGTKVECHDNTPSEEDDAPKVKQETSFEFVGDGDHDMDFEDHTEFPLNEPVVEINEKTLVQPEAEYLEIQFMKEEKEPIVSDGDDNRDVDSEDEQPLTKVKAARPGRPGRPAKRKNDDEDWKPDTGELKQANEELKQEPVEKKPKKQGPKPKKRKAKNLKIIQGEATITAIKRIHSLERLVLQRGEKRFVCQFCKKVLRYKTLMQTHLKEHRPYECDVCHKRFNRTYHVRVHVETHTDEKPFECDICHLKLRGTSFKTHLRTHTGEKRYQCYVCGKRFHQSNNIKRHLLIHSGEMPHECDVCHRRFNQLCNLRTHVKKHTEKCFECDVCGSKIGDKKSLRIHIKTQCGVVPKIQMSEDLIKSKKILSLEYVSINNRRRYRCQFCQKVFANRDHMRAHLRMHTGEKPYNCIYCAASFGRVYHLKRHIRIHTGEKPHQCEFCIASFSRLYHLKRHMVSHESEAPYGCNVCHRRFKREDNLKTHLKIHNKDKDAVQVKADYKTIKTESVTALPHDVSQDIKPHVCVECGAAFSQFKQLKKHSILHTGEPVYECDYCHRTYPKKCYLRVHIQKHLDDKKYECDICRLKFSKQEMLDEHFKVHAVQIKSENANVSKSETEDGEMKKCYQCNDCGARFARNYRLKRHLLMHTGDASYECVFCHCKFNQKINLRMHLKKHTGQRTHKCDLCQRRFPDKDKYERHLKKHVDGKPLSIYDLKPFLCNQCGTRFSRRYHLNRHLATHSGQPIHKCDFCPYVFNIRNDLRLHLKTHAMEKKYACEVCDRRFRAKKSLEKHVLAKHNDDPNVEKKEKVKKPPKSDTEAVVCNVCGIVLNRKYDLKRHLLQHSGERPFECNICHKSFTQNSSLTIHMRRHTGYKPFECTICQYKFYEKSNLTIHMTKHSDEKPHQCDVCNRKFKRKDVLTMHQKIHSGEKPHECYICLRRFALKKTMKKHLNTHKVEKVENTFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -