Arep029427.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- -
- Assembly
- GCA_963576875.1
- Location
- OY756243.1:7806372-7808660[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.013 6.9 7.7 1.6 18 43 7 29 3 30 0.93 2 19 0.0052 2.7 9.0 0.1 18 43 66 88 59 90 0.81 3 19 0.0095 4.8 8.2 2.0 17 43 96 119 94 120 0.90 4 19 0.13 67 4.5 2.6 16 41 123 145 119 148 0.87 5 19 0.0048 2.5 9.1 2.2 14 43 148 174 141 175 0.83 6 19 0.0026 1.3 10.0 0.6 18 44 181 204 176 204 0.91 7 19 5 2.5e+03 -0.5 0.1 19 43 213 234 208 235 0.76 8 19 9.7e-05 0.049 14.6 3.7 13 44 240 268 230 268 0.88 9 19 0.0016 0.83 10.6 4.0 13 43 289 316 273 317 0.90 10 19 0.29 1.5e+02 3.4 0.1 15 44 350 376 345 376 0.84 11 19 1.1 5.5e+02 1.6 1.7 14 44 394 421 388 421 0.83 12 19 1.1 5.6e+02 1.6 2.9 9 29 418 438 411 452 0.76 13 19 0.032 16 6.5 2.3 18 39 456 474 454 479 0.75 14 19 0.5 2.5e+02 2.7 4.6 15 44 482 508 468 508 0.85 15 19 1.3 6.4e+02 1.4 1.2 18 28 515 525 510 538 0.81 16 19 4.9 2.5e+03 -0.5 0.4 19 43 546 567 542 568 0.72 17 19 6.2 3.2e+03 -0.8 1.5 14 28 571 585 565 592 0.83 18 19 0.00022 0.11 13.4 0.2 18 44 611 634 600 634 0.91 19 19 1.9 9.9e+02 0.8 0.1 10 27 676 693 671 696 0.84
Sequence Information
- Coding Sequence
- ATGAACAACCTAGACTATGTCTGCGATTATTGCAGCCGAACCTTCACGAGGAAGTACAATCTGCAAACGCACATTGAAAACTGCCATCTAAATTCCTCATGCTACTGCGAAGTATGCCACATGACTTTCGGCAGCCCATCCGGTTTAAACCTCCACTTGTTAAGAGGCCACAATAGACATGACCAACCAAACCCAGAGTGTGACATTTGCGGAAGAATCTTCACTAGAAAACAGAATATTGTGTCCCATATGATGACTGTGCACTTGCAAGGTCTGGGACCGGAGATTAAATGCCAGTTATGCCAGAAAATCTTCACAACGGAACGCAATTTGAGGAGACACATCAACGTACTTCACAACTCGGCTACGGTCAGCTGCGAAATATGCCACAGAGTTTTCAAAGAGAAGAAACGGCTGAACGAACATATGCAATCACATAACGTTAAGAATATACAGTGTTATTTGTGCGATAAAGCTTACACAAGCAACGCAAACCTGAAACGGCATATAGAGATGTATCACGGAGAGAAAGAGGAGTTTAAATGTAGTATATGTCCGAAGATATACACTTCCAATCAGAGTCTCAGAAGGCATACACGTACGAGGCATCCGACAGATAGTAACGAAGAATTTGCGTGCGAATTCTGCGATTTCACAACTGTTGGCAAGGATAATTTAGACACTCACATATTGCACTATCACAATGATATGTACGAACCAGAAAAGGCCAATGTTTGCCAAACTTGTGGATGCACATTCGAAAGGGAGTCCAATCTGCGGCAGCACATCAAAACTGAGCATTCTTTTGATACGTTCTACCAGTACTGCAAAGAGTCTTTGTTAAAAGACGTAGGGAGAAAACATAAACATGTGTTTTTGAACTGCGAATATTGTACAAACACTTACAGCAATATATACGAATTAAAACATCATTTAAGATCAACACATGATAGGGAATACCGCCTTTcgacttgcaatgtatgttttGGGAAATTCTATACAGAAGAAACTATTATTCTACATAAAAAGATATGCATCCCGCCTCCAAATGTAAATTCTTGTTCGCACTGCGATAAATTGTTCACTGATATATCCAGTTTGGAATTCCATATTCGTATTTTCCATCCGCAAGCCCAAATAGCTGACTCGAATATCAGTTCAACGAAAGATGAAGCGTTGGAGGGTAACTTCAAATGTAGCCAATGCGAAAGAGTGTACTACAGTGAGAGGTCTCTTAAACATCATGTCAAATTAAGGCACTCGACTGGAGAAGCGGTGGAATGCGATATCTGTTCCAAAGTCTTTGACAACAAGTATTACTTAGCGTTCCACAAGAAGAATGTTCACAGCCACGTTGCATGGTCTAAATGTAACTACTGCGATAAACAGTTTAAATCAAAGAGATATATACGAAGGCATATCAAATATACGCATTTGGGTATGCAGCGGTACAAATGTATCGAATGCGAAACTctttttaaagaaaagaaaagtctACGTAAGCATGTAAGGTCAAAGCATCCGAACTCAACAGCTTTTCAGCAATGCCACATTTGTCACAAGAGATTCGAGTCAGCTAAATCCTGTAAAATACATCTAAAACTACTGCACTCTTTCAATATGAACACTTATCCTTGCGACTTATGCTCCGTATCCTTCAGTTCAAATGAAGCCTTAACAATTCatctaaaaacaaaacatttatccgaagataaaatattcaaatgcaAGGAATGTAACTCCGTTTTCAAAGGGCAGGACAAGTTTGAGAAGCATAAGAAACTGTGCCAAGCAAACTTCATGCCGAATGTAAGGACGAAAGTGTTGCCCCGTTGCATTATATGCATGAAAGACTTTAGTACCAGAGAGACATTGAAGAGGCATATTAAGAATTTTCATCCTGAATTTGACACAGACGATTTAGCTACGTATGGTTCTAAACGTCGCTTCTTTACAATTGATTGTGACGATTGCGTGAAGAACTTCCAAGACGATGTACACTTTCAAGTGTACCTAGCAGTTAAGCATGATAAGGACGCCTTCGTATTGAAATGTGAGACTTGCAAGTCTACGTACAACGCGTTAGATTATTCGATACAAAGATACAAGTTGATGAATGTCGATAGTGCTCAGAGTAAAATGATTTTAAGTGAGTTATGTACGACTGAAATGAGTGATGCTGAAGAGCCAGGTTTTGGCTCTTTGCATGAGCTGATGGAAGCTGAAAGCACTACGAATGATTTGGAAGAATTGGCAGCGGTGGTCAAAAGTGAACCCGTGTCTCCTTGA
- Protein Sequence
- MNNLDYVCDYCSRTFTRKYNLQTHIENCHLNSSCYCEVCHMTFGSPSGLNLHLLRGHNRHDQPNPECDICGRIFTRKQNIVSHMMTVHLQGLGPEIKCQLCQKIFTTERNLRRHINVLHNSATVSCEICHRVFKEKKRLNEHMQSHNVKNIQCYLCDKAYTSNANLKRHIEMYHGEKEEFKCSICPKIYTSNQSLRRHTRTRHPTDSNEEFACEFCDFTTVGKDNLDTHILHYHNDMYEPEKANVCQTCGCTFERESNLRQHIKTEHSFDTFYQYCKESLLKDVGRKHKHVFLNCEYCTNTYSNIYELKHHLRSTHDREYRLSTCNVCFGKFYTEETIILHKKICIPPPNVNSCSHCDKLFTDISSLEFHIRIFHPQAQIADSNISSTKDEALEGNFKCSQCERVYYSERSLKHHVKLRHSTGEAVECDICSKVFDNKYYLAFHKKNVHSHVAWSKCNYCDKQFKSKRYIRRHIKYTHLGMQRYKCIECETLFKEKKSLRKHVRSKHPNSTAFQQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSNEALTIHLKTKHLSEDKIFKCKECNSVFKGQDKFEKHKKLCQANFMPNVRTKVLPRCIICMKDFSTRETLKRHIKNFHPEFDTDDLATYGSKRRFFTIDCDDCVKNFQDDVHFQVYLAVKHDKDAFVLKCETCKSTYNALDYSIQRYKLMNVDSAQSKMILSELCTTEMSDAEEPGFGSLHELMEAESTTNDLEELAAVVKSEPVSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00146636;
- 90% Identity
- iTF_00012227;
- 80% Identity
- iTF_00013317;