Arep025538.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- -
- Assembly
- GCA_963576875.1
- Location
- OY756239.1:1248266-1248829[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.7e-08 1.6e-05 25.4 0.0 7 36 26 55 21 63 0.89
Sequence Information
- Coding Sequence
- ATGAGTGGGAATACGTCAAAGAGGAAGAatgaagtgaaaaaaaaattatttcagtacTCACCCCATAAAGTTGGTTTGGCGTTAGAAGCAATTAGAAAAGGAATGAAGGTATCGACTGCCAGTAAGAACTTTAACATTCCTAGAACAACCTTGAGACACAAGGTTTCTGGTAATGCACCTGAAACCTCTGGGCGTGTAGGACCTCAAGCGGTTTTGGGCGAGCAAATTGAAAATGATCTCGTTATATGGATAAAAGAGAGTGCTCGTGTTGGGTTTCCAATAAATAAAGAAGGACTATTTGACTCTGTGAAAAAAATTGTGGAGAAAGGAAATCTAAAAACACCTTTTATAAATAATAGGCCCTCGAGGTCATGGTTTGAAGGGTTTATGGCCAGACACCCCGACCTGAGCCAAAAACATGCAGAGTACATAAATAAAGCTCGAGCGTTAATTACTGAAGAGAAGATAAGAAACTGGTACCAAGAAGTTTCTACACTGTTGGGCCCGGAAAACCTGAAAATCTTCTTTTTTTCTTGCACCAAAAGGAGGATTAGTACTAGCTGA
- Protein Sequence
- MSGNTSKRKNEVKKKLFQYSPHKVGLALEAIRKGMKVSTASKNFNIPRTTLRHKVSGNAPETSGRVGPQAVLGEQIENDLVIWIKESARVGFPINKEGLFDSVKKIVEKGNLKTPFINNRPSRSWFEGFMARHPDLSQKHAEYINKARALITEEKIRNWYQEVSTLLGPENLKIFFFSCTKRRISTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01569255;
- 90% Identity
- iTF_01569255;
- 80% Identity
- -