Arep017881.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- -
- Assembly
- GCA_963576875.1
- Location
- OY756229.1:19702924-19715696[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-08 1.2e-05 25.8 0.1 3 42 261 301 260 303 0.87 2 2 3.2 9e+02 0.6 0.0 27 44 353 371 351 372 0.92
Sequence Information
- Coding Sequence
- ATGAAGAATACCACAGTATTAGCATTACGCCACACATTTCTTTTTCAGTTGCTGACACCAAAAATTGAGGTGGAGATAGACGAGATGTCCGACCATCACTCTGCATACCATTGCGACGAATGCTGCCGAAGAGCTGCCGGGGAAGACGCCGCCGCATGCCCTCATctatCACAAGTTGAAAGCACGAAAtccaaaagaaaaagaaaagtgaAAAGTAAATCTTACACGGATTTTAGACAATCTGAAAATGCTCGGAAGAGGAGGTTTTTGGACAAAATGACGCCTGAACAGCGGGCCCTGAAAAGAGAGAGGGATCTCAAGTCTTACCACAGGAGGAAAGCTGAGAAGAACTTGGTTGTAAGCAGCATGAGCGAAGAGGAGAAAAGTAAGAGAAGAGAGCAGTGGAAGAAGAGTTCTAGGAGGGACGGCCGCCCGTTTGGCCGGCATGCGCGCGCGCGGCACGCCCGCCAGCTGGCGTGCGGCGTGTGCGGCGCGTGCTTCGACAACGCGCCCGGGCTGCACATACACCAGGGGCGCGTGCACCACATCACGCGAAACATTCTCACGTCGATGAAAGTTAAGAAGAAATTGAAGAAGAAAACTAAGGGCAAAGTGGAGATGAATACTAAAGGAGAAATATTCGCGGAGCCTCACCTGCTGTGCTCGCAGTGCGGGATTCAGTTCTCGACGGAGGCCGCGTGGCGGCGCCACTTGGACAATGGCCATCACATcaatGACGCGCCAATCGAACAGAAAAAGAAGCGGAAGATGTACAGAATAGAAAATTTAGAGAAGGCCTTCCAGGCCGCTAAGAATAAGGAGATGAACATACGAACTGCCGCCAGAACATTCGGAATACCCAGAACCACCCTACACTACGCTCTAGCGAACGGCTCTGTCAGTACCAAAATGGGCCCCGATCCCATTTTTaataaagaagaagaacaaaTCTTAGTGAATCATGTGATAAATGAGGGCCATTTGAGTCCAAAGTCTGTTCTGGAGAAAGCAGCGCAGTTGACGAAGAAGTTAAAGCGCGAGAAGTTCTTCAAAAATGGCGTCCCGGAGAAGTCTTGGTATAGCCGCTTCCTCAACAGGCATCCGGAACTGAAGAAGTATGGAAGTAAGGGAAAATAA
- Protein Sequence
- MKNTTVLALRHTFLFQLLTPKIEVEIDEMSDHHSAYHCDECCRRAAGEDAAACPHLSQVESTKSKRKRKVKSKSYTDFRQSENARKRRFLDKMTPEQRALKRERDLKSYHRRKAEKNLVVSSMSEEEKSKRREQWKKSSRRDGRPFGRHARARHARQLACGVCGACFDNAPGLHIHQGRVHHITRNILTSMKVKKKLKKKTKGKVEMNTKGEIFAEPHLLCSQCGIQFSTEAAWRRHLDNGHHINDAPIEQKKKRKMYRIENLEKAFQAAKNKEMNIRTAARTFGIPRTTLHYALANGSVSTKMGPDPIFNKEEEQILVNHVINEGHLSPKSVLEKAAQLTKKLKREKFFKNGVPEKSWYSRFLNRHPELKKYGSKGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -