Arep006883.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- clz9
- Assembly
- GCA_963576875.1
- Location
- OY756219.1:12949004-12956062[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.9e-10 2.8e-07 31.0 0.0 4 35 30 62 27 69 0.89
Sequence Information
- Coding Sequence
- ATGCAACGTAAAAATTCAACATGGCGGCTTAATAGTGCGaTGGTCCGACATTATAAGAGgattaaagaaaaaagttattcagaGCGGCAACTAGAACAAGCAGTTGACGctgttaaagaaaataaaatgacgCTCAGCCAAGCGGCACAATTATTCGAAATACCAAGAACAACGATTTCTTTTAGATTAAATCATTGTGTGATGACAAGAGCTGGACACCCAACAGTTTTTTCTCCagaatttgaaaaaagaatGGCGGATTGCTTGCACACAATGGAGAAAAACGGCTTCCCAATAACAAGAAAGGAAGCCTCTGTATTAATTTCAGAATATGTGCGTCAAAATGGCTTGGTCACACCTTTTAAGAACCAAATTCCAGGAAAAGATTGGTTTCACTCATTTCAGAAGAGGAAtgaactttcaattaaaaaaccaCAAAATGTAGAACTTGCAAGAAAAAATGCTTGCGACCCGTTCATCATTTACGGTTATTTAGATTTGATGGAGAGCGTACTACAAGAATTAGAGTTAAAGGAAAAACCCAAACAAATCTACAATTTGGATGAAACGTCCATTTGCAATGACCCAACTAAGGGTAAAATTATAGGAAAAAAAGGTTTTAAGGCCACTAGAACAACCAGTGGACCTGGACGCAATAACACAACCGTTCTTTTAGCTACAAATGCTTGCGGTGACAAAATTCCTCCACTGATTATATTCCAGGGAAAGTTTCTCTGGAAGCAATGGTTTTACGCCGAGGAAAAAGTTAAAACCGCTTACGCGGTTAGCGTTAAAGGCTGGATGGAGACTTCTATTTTTGAGAAGTATATGAGAGATGTTTTTGTCCCCGCGATAGGTCCAGAGAGACCAGTCCTCTTAATATATGACGGACACAAAACACATGTAAGTTTAGGTGTGATAGAATACGCGGCGTCTCAAgatataacaataattaaacttCCACCACATTCCTCTCATGTATTGCAGCCGCTGGATTTAAGCACCATGAAGCCCTTAAAGGACAGATGGGAAGCTGAATTAATAACATGGCAGAGGCGTCATATTGGGTCACGATTGCCTAAAAACGAATTTTCACGAATTCTCACCAAGATATGGAGTGATATGAATCCCGTCATTTTGGCCAATGGGTTCAGAAAAAGTGGAGTTTATCCATTTGACCGCGAGGCTATTCCTAAAGAATTATTCGATCcagtaaaatacaaaaaatgggAGAACCGTGAAGTTTTGAGCCCTGCGCTATTGCCTTGCGACGCTGAATTTACACCACCAGGACCAAGTTCAATGAGTTTGGAacgcaaaataattaatgacGATTCAGAAAAAGACTCTGTGCTATTGCCTTGCGACGCTGAACTTACAAAACCAGGACCAAGTTCAATGAGTTTGGCACGCAACATAATTGACAATTCAGAAACATCACAAAACCAGGAACAAGATGAACATCTACTGCAGTTGCTCGGCAACACTGGGCTATCAGAACCAGTACCAAGTTTAATGAGTTTgacaatgaaaataattaacaacACTGGGCTATCAGAACCAGTACCAAGTTTAATGAGTTTgataatgaaaataattaatggAGGTCCAAATCAATTAGGAAAACACGAACAAAATGACCACAACACTCCAGAAAAACCAGACCAAGAAGTAAAAACTATTCTATCTCAGAAAAAAAGTTGtgaaaatatttcatttgaaGAACTTCTATTAAAAACTGTAGGTAAAAGTAATTCCCCCGTGCCTCGAAAAAAGCGAATCACAAATAGCAATGCAGAAGTTTTAACATATAAAGATGTGATGGATCGTATGAGAAAAGAACAAAATGAAAAACAACACAATAGCTTAAAGAGGAAAAGATCTAAAGATgataaaaaatcagaaaaaaataagcaaaagaaaaaagaaaaaaaaactgttaccaAAAAAGGGtctaaagttaataaaaaaaaacattcagatACCGACAGCAACAGCACAGGGTCATTCGAGTGTGTTGATGAGTCTGATGATGACGAAGAGAGTTTTTTTAGAGGCGTTCTTGATCAGCTATCCGATGAGGAAAATTTTAATGAACCATCTACAAATAATGTTGATGCTGACTATAAAGATGTGATGGATCGTatgaaaaaagaacaaaatgaaAAACAACACAATAGCTTAAAGAGGAAAAGATctaaagatgataaaatatcagaaaaaaataagcaaaagaaaaacaaaaaagaactgTTACCAAAAAAAGCGTTCTTGATCAGCTATCCGATGAGAAAAATGTTAATGAACCATCTACAAGTAATGTTAATGCTGACTTTACTGGAGCTAGTCATGAAgtatttgacattgcaagaacaagacaaaacatattataacTAA
- Protein Sequence
- MQRKNSTWRLNSAMVRHYKRIKEKSYSERQLEQAVDAVKENKMTLSQAAQLFEIPRTTISFRLNHCVMTRAGHPTVFSPEFEKRMADCLHTMEKNGFPITRKEASVLISEYVRQNGLVTPFKNQIPGKDWFHSFQKRNELSIKKPQNVELARKNACDPFIIYGYLDLMESVLQELELKEKPKQIYNLDETSICNDPTKGKIIGKKGFKATRTTSGPGRNNTTVLLATNACGDKIPPLIIFQGKFLWKQWFYAEEKVKTAYAVSVKGWMETSIFEKYMRDVFVPAIGPERPVLLIYDGHKTHVSLGVIEYAASQDITIIKLPPHSSHVLQPLDLSTMKPLKDRWEAELITWQRRHIGSRLPKNEFSRILTKIWSDMNPVILANGFRKSGVYPFDREAIPKELFDPVKYKKWENREVLSPALLPCDAEFTPPGPSSMSLERKIINDDSEKDSVLLPCDAELTKPGPSSMSLARNIIDNSETSQNQEQDEHLLQLLGNTGLSEPVPSLMSLTMKIINNTGLSEPVPSLMSLIMKIINGGPNQLGKHEQNDHNTPEKPDQEVKTILSQKKSCENISFEELLLKTVGKSNSPVPRKKRITNSNAEVLTYKDVMDRMRKEQNEKQHNSLKRKRSKDDKKSEKNKQKKKEKKTVTKKGSKVNKKKHSDTDSNSTGSFECVDESDDDEESFFRGVLDQLSDEENFNEPSTNNVDADYKDVMDRMKKEQNEKQHNSLKRKRSKDDKISEKNKQKKNKKELLPKKAFLISYPMRKMLMNHLQVMLMLTLLELVMKYLTLQEQDKTYYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00012909;
- 90% Identity
- iTF_00012909;
- 80% Identity
- -