Arep004711.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- -
- Assembly
- GCA_963576875.1
- Location
- OY756217.1:14936149-14938470[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-10 3e-08 34.2 0.5 4 42 16 55 15 57 0.91 2 2 6 1.7e+03 -0.3 0.0 28 43 136 152 135 154 0.87
Sequence Information
- Coding Sequence
- atgGAACCTCCACCAAAACAACGTCGAGGACTTTGGTCAATTCAACAATTACGAGCTGCAATGGCTGCTGTGCAAGAAGGACTAATGTCACAACGTGCGGCGGCTGCGCATTATTCGATTCCCAGAAGAACATTGCATTTTgctgaatacaaaaaaatatatgaagagCTAGAGATTGGACAGCATCCACAACGTTTATACAACATGGATGAAAAAGGCTGTCGGCTCACCATTCATAATCAACCAACAGTATTGGCACAAAAAGGTGTTAAAAGAGTGCATATGGTTGCTCCAGAGCACGCAGAGAATGTAACTGTGGCTTGTTGTATAAACGCATTAGGTAGTCCAATTCCCCCAATGATATTATTCAGGGGGAAAAGGATGAAGCCAGAATTCAGAGATAATTTGCCTGCAGGATCTCTCGtgaaaatggcaaaaaaaggcAGCATGACCTCGGAACTGTTTGTAGATTTCATACATCACTTGGGAAAATACAAATCAGCTGGTAGGTGTCTTTTGGTCTTTGATGGTGCTTCATGTCATTTAGACTACAATATTGTTGATGCAGCAGAGCAACACAATATTGTACTGTATTGTTTGCCATCAAACACTACCCACGAGCTTCAGCCTCTTGATAAAAGCGTAAACAAATCATTTGAACACCACTGGGATGAAGAAGCGATGCGTTATTTGTACCAAAGTCAAGAGAAAAATATAACCAAAGTGCGATTTAACCCAATTTTTAGAAATGTCTGGTCAAAATGTATGACCCTCGAGAATATTATAAACGGATTTAGAGCCACAGGCTTGTTTCCCTATAATCCAGATGCAATACCAAATGAAGCATATGCACCATCTATATTGACTGAGAGACAAACTGTAGCACCAGAAAATTTGACGACAGAAAATAATGAATTCTTGCAGTGTGTTCCTAATTCTTCAAGACGGAGTACATCACGAAGACCGGCCAGCAATGATTCAGATTCAGAAAATACATTTTgtgaagaacaagaaaatgatCAGTTTTTGCAAGAGTCACCAACGCCTGGTCCTAGTGGTATAAATTTACAGCATGCAGTGCAGAGGCCTGACGATAGATTTGATTCTGACGAGTCGTTTGAAAACCATAGTTCATGTTCACCATCTTTGCTTCATCAGACCGAATCGATATCACTTGTTTTAACTGGAGCAGGAATAAAAAAACGTTCTTCAGATGATGAAAATATGCACCCAATGTCAAAACAACAACATACTCCCAAAAAACAGAATACGTGTAGTGACATGTATAACACAGGACAAGTACGTGAGGACTGTGCAACAACAAGCGATTCAGAGGATAATTTGCCTTTATCGAGATTGGAAGCAAAAAAAGCCGTAAAATCACCTTTTCAACAATTAATACCAACACCAAATTTTGCTCAGGTGAAACAAAAGAAGCCCAGACgtaaagcaataaattataaagCCCGGATAGTGACAAAAGATTTATTTGCAGAtagtgtaaaacaaaaaaataaaaaagaacagcAGTCAAAGAAGAAGACCGAAAAATGTGAAAAAGAACGTACAGCAaagcaaagaaattataaaaaacaggaGTTAAAGGGCAGAAGCCAAAAAAAGATAAACCAAACACAAagcaagaaaacaaaaaatattagtgACACCGAAATAGATAAATGGTACTGTTATGCTTGCAAGACTGAGAGATTTGAAGACATGCGCCAGTGCCCAAATTGTCGAAGATGGTTCCATGAAGAATGTCTGGGCCTGACAAAAGAAGACTTTGATTTTGACTGTCCTATGTGCAATTAG
- Protein Sequence
- MEPPPKQRRGLWSIQQLRAAMAAVQEGLMSQRAAAAHYSIPRRTLHFAEYKKIYEELEIGQHPQRLYNMDEKGCRLTIHNQPTVLAQKGVKRVHMVAPEHAENVTVACCINALGSPIPPMILFRGKRMKPEFRDNLPAGSLVKMAKKGSMTSELFVDFIHHLGKYKSAGRCLLVFDGASCHLDYNIVDAAEQHNIVLYCLPSNTTHELQPLDKSVNKSFEHHWDEEAMRYLYQSQEKNITKVRFNPIFRNVWSKCMTLENIINGFRATGLFPYNPDAIPNEAYAPSILTERQTVAPENLTTENNEFLQCVPNSSRRSTSRRPASNDSDSENTFCEEQENDQFLQESPTPGPSGINLQHAVQRPDDRFDSDESFENHSSCSPSLLHQTESISLVLTGAGIKKRSSDDENMHPMSKQQHTPKKQNTCSDMYNTGQVREDCATTSDSEDNLPLSRLEAKKAVKSPFQQLIPTPNFAQVKQKKPRRKAINYKARIVTKDLFADSVKQKNKKEQQSKKKTEKCEKERTAKQRNYKKQELKGRSQKKINQTQSKKTKNISDTEIDKWYCYACKTERFEDMRQCPNCRRWFHEECLGLTKEDFDFDCPMCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00012876;
- 90% Identity
- iTF_00012871;
- 80% Identity
- -