Acon030036.1
Basic Information
- Insect
- Acrobasis consociella
- Gene Symbol
- -
- Assembly
- GCA_963555685.1
- Location
- OY743132.1:2351256-2377376[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.4 1.2e+02 4.4 0.3 1 19 523 541 523 543 0.93 2 12 0.022 1.9 10.1 5.1 1 23 564 587 564 587 0.92 3 12 6.3 5.3e+02 2.3 1.3 2 23 651 672 650 672 0.94 4 12 0.0028 0.24 12.9 1.2 3 20 939 956 938 959 0.91 5 12 0.00075 0.064 14.7 0.8 2 23 965 986 964 986 0.96 6 12 6.5 5.5e+02 2.3 1.1 1 23 1004 1025 1004 1025 0.85 7 12 6.4 5.5e+02 2.3 0.9 5 23 1071 1089 1068 1089 0.88 8 12 0.005 0.42 12.1 0.2 2 23 1105 1126 1104 1126 0.96 9 12 4e-05 0.0034 18.7 6.1 1 23 1132 1154 1132 1155 0.95 10 12 0.00014 0.011 17.0 0.2 1 23 1159 1181 1159 1181 0.96 11 12 0.015 1.3 10.6 0.8 2 23 1187 1209 1186 1209 0.95 12 12 0.015 1.3 10.5 0.5 3 23 1247 1268 1246 1268 0.96
Sequence Information
- Coding Sequence
- ATGTCGCAACCAAAACGTAGATCTAGAAAATCTAAATTGGTGCCTCGATGTACAGAACCAGAGATTGAGGAAGTGATTGAAACGGAGGAGGAAGAGGAGCAGCAGATAAAGATAATGAACACCATGAGTTTGGCCTCCCAACCCCACGAGCCCCAGCCTGGGCCGAGCAAGGGTGGGGCGGGGTCCCTACAGTTCAAGGTCGACATCGAGGTGGAAGAATGGATTGATGACGACCTGATTGAGgAAAATTTCGCCAAAATGCAATCTGAGAGATTATCTGAGACCTTGGACAAAGAAATAGCTGAAGAAGCGGACTGGAACAACGATGAATATGGAAAGCTGTGGGCCGAAGCAGCCAGCGACAGCGAAGTGGAGGAGAAACCTCTCAATGAGTATGAGAAACTCATCAAAAACCAGATTGATCCGAGCATACTAGCAGAACCTAAAGAGCAAGAAAATGACCCAAGTAACGATGCTAAAGAAAAAAATCCTACACCTAAGACCAAGAAAAAGAGAGTTGCAGCTAAAAAATCGTCTTCTAAGAAGAAAATTGCTATTGAAAAGACAACTGTGAGGAACATAGCGATACAGCAACCTAATGAGGAAACAAATAACACGTCTACTACCCCACAAATTAGACAGTACAAAAGGCCTGGCCCTAAATCAAAGACAGTAAAAccacaaattaaaattaacattgTATACAGCGAAGATTCACCTACGCCCTATCATATCGATATTCACACTCAATCTAATATCGATTTACCATCCATATCATTGGAGAATCAAAAGAAAAAGTGCACTTTAGAAACAGGATGTCCTATAAACGAAAAAGGATGTCCTATAAACGAAAAAGGAAAAGTTTTAAGTGAAAATAAGGAAAGTGATAAGGATTTGAAAGTGTATGTAATACCACCAAATTGGAGGAAGTGGTACGAAAGCAGTCGCGTGTCCATCAAAGATTTGGACAAATACGAGAAATCCCAAAACAGTGAGTTGGTGAAATTTGGCAAATTTCAAAACAGCGATTCGAAGAAAGTGGAGAAATCTGAAAGTCTTTTAAAGTCGAAAAATACAGTGGAATTGGTGCAAATATTAGTTGAAGAAGATGATATATTAGCGGTGTCAGACAAAATATTTGAGACAGTTAGAAATGCAGATGTAAAGGTTGAATCGGACATCAAATGTACAAGGATGTTGCACGTCGAGCTACAGAACCGGATAGGCCAGACCAGGTTCATTCGACATGAGTTCACCAAAGAGGAAGCACTTATAGACTTTGCGTTAAGGCAGTGGTGTAGTTGGCAAGGGATGACTAAAGTCCGTTCCGTTCCGTTGTCTTACAAATGTTACATTTGCAACGAGgcgtggtggcatttgtatccCTTTCAGACTCATTTGAAGAAGCATGAGTCAGTTCAGgtgtcgcttgaaaaacaaaatcaagAATGCCATATCATTGCTCATTTAGGCAACAGACCTTCGTTTTATGAGATTCCCATAGAAGGTGACTGCTGGAAGTGTGGCAAAGGACCAGACTGTCACTTTGCCCTCAAAAATCAAGTGTACACATGCAAAGGATGCAACAACTCGTTATACACATGCGTAGCCCTAGCGGAACACGAAGGAATATGCTTAACGATATGGAAAAAGCAGATGGAGCTACAAAAAACTAAAGATGTAAAAGCATACCAGTGCAAAATATGCCCACAAATATTCTTCACGGAAGAATTACTGCACAAACATCAGTATTTCTGCCACGTACCACGTTCGGATTATCCTATGCTGGTCCGGCTGACTCAATGTCCGCAGTGTACCCAGTACTACTATGTACAGAAGTTTCACTACTGCAGTTTCAAAATACAGAAGTATCGGTGCAAGTATTGTTTAAGACATTTCCCATCGACTCACACATGTAACATTCATGTGAATCACATGGAAAACAATGTTATGTGTCCATTCTGTTCTAAACTTGTTCGGAGTGAGTGTATGCTGGGCAAGCATTTTTTGAGCCATAACGATAGGTACATGATGGTGTATAAGTGTTTGATGTGTCTCAGCAAGAATGTGTTGCTGGAGGATGTGGCGATGGTGACCAGACACGCAGACTTTGTGCACAAGGCGAGCAAGTATGTGAAGAGCATGTGGTGTTTCGCTGAGGTCCTGCTGCCTAGAAGCTTATACGATACTAAGAAAGTGGTGACCTTGCACACCCCCTCCACAGACCAtgaaaaattaaaagaatcATTCCTTAAGAATCTGCGCATGGAAAATCGGAAGGAATTGGAAACTGGAGTAACTACACCATCTACAACTGAGGCAGAACCAGAAACTGTAGCGGTGAAGGTAAAAAATGAAATGGAGAACTATTTCGAAGAAGATTCTTCACAGATAGATGATGACCCTGAATTCAAACCATTGATAATCGATACAAGTTCTATAAAAGTGGAAGTAAATGATGATTTCGAGGGAACAGAGGTGAACCCAGCGGATTTAATGGATACAACACAATCAGAAATAGAACCAAAGACAGAAATGGAAACAGAAACGGAAATAGATACAGTTATAGTCAAACAAGAAGCAGATGATATCACAACAGACCAAGAAACATCTCAAAATAGCTCAGAAAAAGACATGAACAAATTCTCGGAGAAACTGCAGACTTTCCTGGAAAACATGGACGAGGAAGAACAAGAAATTAAAGAAAACTCGTACAGTTGCACTTTGTGTGATTTCGAAGGGAACAGAAAGCAATATAAGATTCATTTGAAACATTGTGACGCCCCAGCTCTTAAGAAGGTTGAAGAAAGAATATGTACTAAATGtgataaatcgtttaaatctaTGAAAGATTACGTCAGACATCTGCCTAAGCATGGTTTTCCTCGCTGCAAATGTTTGGAATGTGATAGAAAATTCCCAAACTTATCGACTTGGATATTACATATAAATGTGCATGTAAGAAGATCGTTTTCAATAGTGAAGTTGATGTCAACGAAGTCTAAAGTGTTTAGGTGTAAGAGTTGTAAGGAAATGGTTCGGATGAGCTCGTTCTTCCAGCATTGGGAAGCCCATTTAGCGTTGCCAAAGAAGAAGACTGTTAGCCCAGCGTTGCAGCAGGACAGTGAGATTGTAACTACTGAGGTGCTTCAGCAAATTATGGaaatATTCGAAATGACATCGACGGACCAAATACCCAAAAACTGCATAATTTGCGGCCGAATCTTCGGGCGCATGTGCGAGAAGAAACGTCACCTCGTAGAACATCTGCTGGAGGCTGCCAGTGAGGGCGTTCTAAAGCACGGCGGACTGGTCTGCCAGATCTGTGGGGACAAGACTATCAAGCCAGATGAGTTCCGTCGCCACATGCGCGACCACGCCGGGCTGACGCTGTACCACTGCGAGCTCTGCAACAAGACCTTCAGCGACTCCAGCAACTTCGTCAAGCACAAGAAGGTTCACCACATGGGTACGTACCACTGCGACGACTGCAACAAGAAGTTCGTGGCCAAGGCGTCGCTGGAAGCTCACATAGCGGCGCACTACGCCGAGCCGCTGCACTGCGCGCGCTGCGACAAGCAGTTCTACGGGGAGGCCTCGTACCGGCGGCACGTGCGGGTCGTGCACGACCGCGCGCCCGGCTTCAAGTGCCGCTACTGCCGCCAGCGGCTGCCCAGCGCGCGCCGCAAGTGGGACCACATGTGGGAGGTGCACCGCGTAAGGAGCCAGCGGGCCGACTGCCCCGTGTGCGGGATGCAGTTCCGCAAGATGGCGGACGTGAGGAGCCATATTCATAAAGAGCATTTATGA
- Protein Sequence
- MSQPKRRSRKSKLVPRCTEPEIEEVIETEEEEEQQIKIMNTMSLASQPHEPQPGPSKGGAGSLQFKVDIEVEEWIDDDLIEENFAKMQSERLSETLDKEIAEEADWNNDEYGKLWAEAASDSEVEEKPLNEYEKLIKNQIDPSILAEPKEQENDPSNDAKEKNPTPKTKKKRVAAKKSSSKKKIAIEKTTVRNIAIQQPNEETNNTSTTPQIRQYKRPGPKSKTVKPQIKINIVYSEDSPTPYHIDIHTQSNIDLPSISLENQKKKCTLETGCPINEKGCPINEKGKVLSENKESDKDLKVYVIPPNWRKWYESSRVSIKDLDKYEKSQNSELVKFGKFQNSDSKKVEKSESLLKSKNTVELVQILVEEDDILAVSDKIFETVRNADVKVESDIKCTRMLHVELQNRIGQTRFIRHEFTKEEALIDFALRQWCSWQGMTKVRSVPLSYKCYICNEAWWHLYPFQTHLKKHESVQVSLEKQNQECHIIAHLGNRPSFYEIPIEGDCWKCGKGPDCHFALKNQVYTCKGCNNSLYTCVALAEHEGICLTIWKKQMELQKTKDVKAYQCKICPQIFFTEELLHKHQYFCHVPRSDYPMLVRLTQCPQCTQYYYVQKFHYCSFKIQKYRCKYCLRHFPSTHTCNIHVNHMENNVMCPFCSKLVRSECMLGKHFLSHNDRYMMVYKCLMCLSKNVLLEDVAMVTRHADFVHKASKYVKSMWCFAEVLLPRSLYDTKKVVTLHTPSTDHEKLKESFLKNLRMENRKELETGVTTPSTTEAEPETVAVKVKNEMENYFEEDSSQIDDDPEFKPLIIDTSSIKVEVNDDFEGTEVNPADLMDTTQSEIEPKTEMETETEIDTVIVKQEADDITTDQETSQNSSEKDMNKFSEKLQTFLENMDEEEQEIKENSYSCTLCDFEGNRKQYKIHLKHCDAPALKKVEERICTKCDKSFKSMKDYVRHLPKHGFPRCKCLECDRKFPNLSTWILHINVHVRRSFSIVKLMSTKSKVFRCKSCKEMVRMSSFFQHWEAHLALPKKKTVSPALQQDSEIVTTEVLQQIMEIFEMTSTDQIPKNCIICGRIFGRMCEKKRHLVEHLLEAASEGVLKHGGLVCQICGDKTIKPDEFRRHMRDHAGLTLYHCELCNKTFSDSSNFVKHKKVHHMGTYHCDDCNKKFVAKASLEAHIAAHYAEPLHCARCDKQFYGEASYRRHVRVVHDRAPGFKCRYCRQRLPSARRKWDHMWEVHRVRSQRADCPVCGMQFRKMADVRSHIHKEHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -