Acon030541.1
Basic Information
- Insect
- Acrobasis consociella
- Gene Symbol
- -
- Assembly
- GCA_963555685.1
- Location
- OY743132.1:9820660-9843209[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0015 0.12 13.8 1.0 1 23 303 326 303 326 0.96 2 14 0.038 3.2 9.3 0.6 1 23 332 354 332 354 0.98 3 14 3.2 2.7e+02 3.3 8.3 1 23 358 380 358 380 0.97 4 14 0.012 1 10.9 3.2 1 23 386 409 386 409 0.95 5 14 0.46 39 5.9 0.1 3 23 416 437 415 437 0.93 6 14 7.5 6.4e+02 2.1 0.1 2 20 444 462 443 464 0.89 7 14 0.00013 0.011 17.1 0.8 1 23 469 492 469 492 0.94 8 14 0.07 6 8.5 0.4 3 19 505 521 503 524 0.93 9 14 0.13 11 7.6 0.1 2 23 530 551 529 551 0.95 10 14 0.0037 0.31 12.5 1.6 2 23 557 578 556 578 0.97 11 14 0.86 73 5.1 0.8 2 23 651 673 650 673 0.91 12 14 8.4e-05 0.0071 17.7 2.8 1 20 678 697 678 700 0.95 13 14 0.1 8.5 8.0 0.5 2 23 705 725 704 725 0.92 14 14 7.3e-05 0.0062 17.9 0.5 1 23 731 754 731 754 0.97
Sequence Information
- Coding Sequence
- ATGTGGTCACTGAAGCCTGTGAATACCGCGGATGCTCAGATTAAGAAGGGAGTGCTGGCCTGTAGAGGTTGCCTGGCGACGGATGTCGTTCTCTACAACATCGAAGAGAACAACCTAGCAGAAGACTATTGCCAACTTTTTGAGGTTtctCTTCCAGACCGTTACCCGCCGCACCTGTGCTGCTACTGCGCAACCTTGCTGCAGAAATTCACCGCATTCAAGCAGAGATGCTACCACGCATACAGTCTGTTGGTGGAAGCAAGTTTCAATGGACAATGTatCTCAGTAACAAACATACGCGACATCCGCGCTTTGCATAAAGAAGTCCATCATCCATACTCTCTCTCAAAGACGGAACATGAAGATATCAACCAAGTAACACATATTGAACCTATGTCTGATTACACTATCACTCAAACTGACGTCGACAATACAGTagaaaacaattttaatgaaagtaaaaaaacagAAACGAAAATAGATTTAGTTtctgatgatgatttatatgATGATACCGAAGATgttatgaatgatgatgatgatattaataatgaagaCGATAAAGACATAGACATGACTCTAGGAGACCTCATAGACGCTGATGACAAGACATTTGAAGTACTTGAAAATGAATGGATGCAGGGAAAGTATAAAATAGAATATCTATTAGATGATGTCGACGCTGCTCTCGATGCGTTTAAAGAAAGAAACCCAGAGAATAAAGATAGTGAATCTAATGAACTTGATGGAGAAACAAGAGTTGACTCGATGCCGACATATAAGCAACGGCAGCTCTTGCCAGACAAAGATATAATCGCGTTTGCGAAGACTTACGACTTTCGAGTGGAATTTTTAACCAAAGAGCAACAGCTACAAGAAATAGAAGAGATGAAACAGAGAAGGAGACATGTGTGCCAAATATGCGGGAAACGTTTAACAAATAAAGAAATGCTCGATGGGCATACTAAGAAATGGCATAACATATCAGCTAAATACTCTTGTAAGATTTGCAACGTAAAATACAACATTTTGAACAAACTTGAGTATCACGTGAGATGGCATAGAGTTACATATTGCTGTCAAATTTGCAAGTTTAAAACGAAGAGTCGCATAGATATGCGGAAACACCACACGAGGCATTCGAAGAAAGAGTGGTTTATATGCGATTGTTGCGGCAAGCGTTTTCAATCAATACAATCTTTGAATAAGCACACACGGAAATGGCATTCTACCTTACATCCGTTTTGCGATATATGTGCTATTTCGTTCACAAACGAAAGAGGTGTACAATACCACAATAAAATAGTACATAACAATGTGAATATGGTGTCTTGTGAGACGTGTGATGCTGAGTTCTTGAATGACAACGCTTTGAAGAAGCACAAGAGTTTGGTGTGTGACTTGTATAATTGTAAACACTGCGGATACGTGTTTGGGAGTGAATACTTGCTGAAGATGCATCTGATTTTGGTGCATAACGTTGCTGGTAATATTGGTCCACTCACATGGGATTGCTGGGAGTGCGGGGTCTGCTTTCACAGCAGCCTCGGCCTGCAGCGGCACGGAGCGTCCTGCAGCCGCGGCCTGCACTGCGCGCAGTGCGGGGCGCCGTGCGCGGACGCACAGCTGCTGGCGCAGCATGCGCGGGCGCATAATACTTCGCTCTTGACCTGCGGAGAGTGCGGCGAGGCCTGTAAGAGCATGTATCGCCTTCAACTGCACTACCGTAAACACTGGCCTGAGGCCATGGAGTCGAGGATTAAAAAGAGGAAGCTGAATACGGGGGGAAAGCCTAAACCGTGCAAGAGGaaaacCGCGCCTAGATACTTCGCCAGACACGGTATCAAGATGTGGGGTGTGCTGGACGGGAAACTGGTCGCACGTACGCCGGACGGCCGCTTACTCGTGGGACACGTCATGACGGAAGACGATGCACAAGCTAAGAAGAGCATGTGTCACGTGTGCGGAAAATGGTTCTTTAGCGACGTGCGGTTGCGGATACACGTGGAACGGACACACGGAGAGGGCGTGTTCCAGTGCGACCAGTGTTCGAAGAGTTTCTCTAACAAACAGGCGCTGCAGACGCACATTGCTTGCCACAGCGAGGGGGTGAAATGTCCGAAGTGCCCGATGGTTTTGAAGACCCTTTCCCTCACCAAGCATATGTTGaaGCACACCCAAGAAAAGCGTCACGTCTGCCAGATCTGTGGCAAAGCCTTCTCCATCTCGACCTCCGTGAAACTTCACATCAAGACTGTACACCTTAAAATGCCTATGCCTCCCAGAGTGAGGAAGCGAAGACTTGCCAAAGAGACAGTCCATAAGAGTGAAAATACAGTCCACGTTAAGAGAAAAGAGACAGTCCACGTTAAGAGTAAAGATACAGATGTTAAGAGAATGGGTGATGAGGATAGAAGAGTGGAGGTGGTGAATATGGAAGATGAGGAAGAAATACAATACGATTATTATGAGGTCGAGGAAGATTCAAATGAACTGAACTTTATCTAA
- Protein Sequence
- MWSLKPVNTADAQIKKGVLACRGCLATDVVLYNIEENNLAEDYCQLFEVSLPDRYPPHLCCYCATLLQKFTAFKQRCYHAYSLLVEASFNGQCISVTNIRDIRALHKEVHHPYSLSKTEHEDINQVTHIEPMSDYTITQTDVDNTVENNFNESKKTETKIDLVSDDDLYDDTEDVMNDDDDINNEDDKDIDMTLGDLIDADDKTFEVLENEWMQGKYKIEYLLDDVDAALDAFKERNPENKDSESNELDGETRVDSMPTYKQRQLLPDKDIIAFAKTYDFRVEFLTKEQQLQEIEEMKQRRRHVCQICGKRLTNKEMLDGHTKKWHNISAKYSCKICNVKYNILNKLEYHVRWHRVTYCCQICKFKTKSRIDMRKHHTRHSKKEWFICDCCGKRFQSIQSLNKHTRKWHSTLHPFCDICAISFTNERGVQYHNKIVHNNVNMVSCETCDAEFLNDNALKKHKSLVCDLYNCKHCGYVFGSEYLLKMHLILVHNVAGNIGPLTWDCWECGVCFHSSLGLQRHGASCSRGLHCAQCGAPCADAQLLAQHARAHNTSLLTCGECGEACKSMYRLQLHYRKHWPEAMESRIKKRKLNTGGKPKPCKRKTAPRYFARHGIKMWGVLDGKLVARTPDGRLLVGHVMTEDDAQAKKSMCHVCGKWFFSDVRLRIHVERTHGEGVFQCDQCSKSFSNKQALQTHIACHSEGVKCPKCPMVLKTLSLTKHMLKHTQEKRHVCQICGKAFSISTSVKLHIKTVHLKMPMPPRVRKRRLAKETVHKSENTVHVKRKETVHVKSKDTDVKRMGDEDRRVEVVNMEDEEEIQYDYYEVEEDSNELNFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -