Acon029702.1
Basic Information
- Insect
- Acrobasis consociella
- Gene Symbol
- -
- Assembly
- GCA_963555685.1
- Location
- OY743131.1:8937657-8945024[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00013 0.011 17.1 0.2 2 23 717 738 716 738 0.95 2 11 0.0055 0.47 12.0 2.4 1 23 835 858 835 858 0.97 3 11 0.0017 0.15 13.5 1.0 1 23 862 884 862 884 0.97 4 11 0.005 0.43 12.1 0.2 2 23 906 928 905 928 0.93 5 11 0.033 2.8 9.5 1.7 1 23 932 955 932 955 0.97 6 11 0.21 18 7.0 0.4 2 23 978 1000 977 1000 0.93 7 11 3.8e-05 0.0033 18.7 1.9 1 23 1010 1032 1010 1033 0.96 8 11 0.0026 0.22 13.0 1.3 2 23 1049 1070 1048 1070 0.96 9 11 0.01 0.87 11.1 0.3 1 23 1076 1098 1076 1098 0.96 10 11 0.46 39 5.9 2.7 1 22 1104 1125 1104 1128 0.90 11 11 0.0019 0.16 13.4 0.1 2 23 1172 1193 1171 1193 0.96
Sequence Information
- Coding Sequence
- ATGGCGGGATCCAACCAACCCGTAACAGAATACAACATGGACATCAACATAAAGGAAGAAACAGAAGTCCTCGAAGACATCACTATCCACATCAAATCGGAAATTGAAACGAATGATCACGAAATCACTACTGATCACGATGAAACAACTCCTTCCAATGATACTGGCTTTGAAAATATACCTTTAGAAATCAAAGAGGAATTGATAACACCGAATTTTGAGAAAGATGTGGTTCCATCCCACAGTGATATTATGGTATCTTTGCCAACTGATTTGGAACAGGATATCTCTAAAGATATGGATGTCGAAGGGACGGTTAAAGAGGAGGTGAATGATGATATAGTGACGTATGATTATCCGAACTTTGATGATGGCAGTATGGACACTTCAGAGGCTCAAGCACTAGGGAATGTGGAGGCGTGTTTGCAGGACGATGTTGTTAAGACTGAAGGTGCGCAGGGTGAGGAGGTTATCGATATCACGGGCGATGTAACCCCGACAACCACGTTGGGCGCATTAGCTAACTGGGGACCGCCTCCAGACGAAGAAGAGTTCTTCAGAAACATAGTTCAAGCTCTCGATCGATTCTACCCTGAAGACTGGCGCTCTTGGGTTGTAAACGATGTCTCTTTCGAAGACCTGTTTGGGAAAGCAATATCTTCTGATGAAGAGAATCGCCTAAGATttgctataccgacagttcaccTTGCTTCAGCTTTTAAAACTACCGTGTTTAGTGAACGtaaatacaagcttataaagCGAACTCTTATAAGATGGCCGTTGGGCAGAGCCCTTATATGCTCACCGCTTGCCACGATGGAGCGAATTCACCCAGAGCCTTGTAGTGGCTTCACTCAAAACCTTCCATCTATTAAACAGCATCTAATATCCCGTGCACAGGCCGTCGAAATTATGAAAAGCTACACAGAAAGGCCGACTTCACCCTCTTTAGCGGCCACAAGCCAACCGCACTCACGGAAAAGACCACACAGTCCAGAGCCAGTCACAAGTAAACTTGACTACTTGTTAGACCGTCAGGATAAAATCCTTGAACAACTGTCTAAATTAACAACAGCAATCCAGTCAAGGGATAAAAGAGCTGCCAATCCGGGAAACATGGAAGAGTCAGATTCGGAAGGTGACATCACAGACAACTGGATTCCTCCCGACTTGACTCCCGAACCATCGCCGGAAGGTGAAAGCCCAGGCATATCTGAAGAGAATCTCTTCGATTTCTCACCAGACATTGAAGAATCTGAAGAGCAGGTACCAACAGCCGACGAAGTCTTAGCAAAGCAAGGAAGTCACTGTCAACGCTTTGGAGAGCCATCATGGCGTAACATCAGCTACGAGAACGTACGGAACCAGTTCGAAGCAACACCCGTCTTCACCAGCTTAAAGATTAACAGCATCTTAGCAACAGTGACCCCTAACTGGCAAAGTATTGCCTTTCTCGAAAGAGCAGATGCCTGTCTCGGTGCTATAACACACGGACTATTACAACAAAGAAAGCACTTTCAAGAAATTTACAGAAAGGCCTCTTTGGAGGTGAAATATTACATGAGGAAACATTTCTTGGCGGCTGAATCTCCATTCCGTAAAACATCGGTCTCTTTGCTTCGGTACACGTGTGGGCGACGTGCCGAAATCATTCAACAACGGAGATCAGTGTACAAACCGCCTAATAAAACACTATACGAACTCTTGCATGCGATACCACCATCAGAAACACATCTCTTCTCGGAACCCCAATTGTCAGATCTGATCAAGGAGCATGGTGGAATTGACAAGAACCATCTCAGGCCTGACTATAACAACCTGATTAAACAAGAAACCGACctgacagtgaccgagacccaTCTGATTTCAAACAAACTCATCAACACCACATCGACCATCACCAACCCCCAAGATGGGTTGATAGAGTCCCGAACAACCAATACTCTGGTCATGGAGATACTACCAATGTCATCCATTTCTGAACCGTTGAACAAAATTGGGAACCCAGAAGAAATATTGCCAACAAGCTATTATGAAGACTACGATTCCTTTCAACTCAATTCTATTACGGGCAATGTCCTTTCTCTAGAACAGGAAGCTTATGGCCTTTTAAAAGCGAAGAAAAAGAACAATAAATCCGTTGTAACTTGTCCGAAGTGCCCGAAAACTTTTAATGCTTATTACGCATTGAAACGGCATTTGGGTGTACATGTTTCTATAGAAAATAGAGCTCAAGGTATTGTTAAAGGACTGAAGACGAGGAAAGAAAACCAGCAGAAGAAGTTGGGGTTATTAGTTAAGAAGGAAAAGACGAAATCGAGCGCAAAAGTTAAGTCTCGCATCAAAAAAGAAACGGTAGTAAAAGAGGAACACGGAGTGAGATCTTCGAATGTTAAAAAGGAAGGTTACGAATGTACCTGTGGTCAAGTTTACCAAAGGCGGAGTAGAATGGAAACGTGTCTACGATCTCATAACTTATATTCCGACACAGATAATAAACACCAATGCCTTTCTTGCACGAGACAGTTCAAAGACAAAGAAGAGTTAGCGTTACATCGAAAGAGGTGGCACAGGAAAAAGTTTCCTTGCAAATTCTGCCCGACAGACTACATAACTAGAAAGGAATTGTTCAAACACTTGCAGTTGCACCAAAAAGTTCAACTGATGGAGTATAAAGCTATATCCGAATTCGTGAAACACAAGAAAAAGTTGCGATGTTTAATTTGTTCGAAAAGTTACTCGGAGTTAACAGATTTGAAGAGCCATGTGATGGAAGATCACAAGGAACCGTACATCTGCCCTCTATGCAGCGGTAGTTTTAGTAAAATCTACGATTTTGCTCATCACACGAAGAGTTTTCATCCGGAAATCGAAGGGCAATCCGTCGTGGACGTACTCGAAGCCTTTTCGAAGCTGTGCAAAGCTTGGAAATGTGAGGAATGTCAACTACAATTCCACGAAGCGGATAAACTGGCTTTACATCAAATAGAAAAGCACAGTCCGGACACAAAGCCAGATTTGCAATTCCAGTGTGCGGATTGTAGAAGGGTCTTTATAAGTCAAAAAGGATTAACCTCTCACAGACGAATACACCATAGTACAGAGAGCACTGAGGAACAAGACGTAGTGGAAAAAGGTGTTATGTGTTTGGAATGCCGAAAGATTTGCAAAGACGAAACCGCTTTGACATCCCACATGCGTTTACATTCACCGGAAAGGAAATATCCGTGTAAATTCTGTGATTTCCGCTTCGCTACGCCAGAGAAAAGAAAGGCACATGCGGAAATTCATACGGGAGATCTCAAGTATGTCTGCTTTATATGCGAATACCAATGCAGCTCTGAAAATAGGTTACAAAAGCATAAACTATCCGTAAAACATTCTAGCATGAAGGAGTTTTTGTTAACGGGCAAGCCGTTGATTGAagaatcttcttcttctaaaaagaagaaagagaagaagaagaaaaaagaaaagagtaTGGACAGTGATTCTAGTGTAGGCGAAGTGTCTTGTGACATTTGTGGTGAAAAGTTTTCAGATGAAACCGCGATGTCGGAACATAAACTAACACACCCTTTTATAGAGTTCCCGAACGAAGATACACCTAGTAGAATATTCTTTAAGTGA
- Protein Sequence
- MAGSNQPVTEYNMDINIKEETEVLEDITIHIKSEIETNDHEITTDHDETTPSNDTGFENIPLEIKEELITPNFEKDVVPSHSDIMVSLPTDLEQDISKDMDVEGTVKEEVNDDIVTYDYPNFDDGSMDTSEAQALGNVEACLQDDVVKTEGAQGEEVIDITGDVTPTTTLGALANWGPPPDEEEFFRNIVQALDRFYPEDWRSWVVNDVSFEDLFGKAISSDEENRLRFAIPTVHLASAFKTTVFSERKYKLIKRTLIRWPLGRALICSPLATMERIHPEPCSGFTQNLPSIKQHLISRAQAVEIMKSYTERPTSPSLAATSQPHSRKRPHSPEPVTSKLDYLLDRQDKILEQLSKLTTAIQSRDKRAANPGNMEESDSEGDITDNWIPPDLTPEPSPEGESPGISEENLFDFSPDIEESEEQVPTADEVLAKQGSHCQRFGEPSWRNISYENVRNQFEATPVFTSLKINSILATVTPNWQSIAFLERADACLGAITHGLLQQRKHFQEIYRKASLEVKYYMRKHFLAAESPFRKTSVSLLRYTCGRRAEIIQQRRSVYKPPNKTLYELLHAIPPSETHLFSEPQLSDLIKEHGGIDKNHLRPDYNNLIKQETDLTVTETHLISNKLINTTSTITNPQDGLIESRTTNTLVMEILPMSSISEPLNKIGNPEEILPTSYYEDYDSFQLNSITGNVLSLEQEAYGLLKAKKKNNKSVVTCPKCPKTFNAYYALKRHLGVHVSIENRAQGIVKGLKTRKENQQKKLGLLVKKEKTKSSAKVKSRIKKETVVKEEHGVRSSNVKKEGYECTCGQVYQRRSRMETCLRSHNLYSDTDNKHQCLSCTRQFKDKEELALHRKRWHRKKFPCKFCPTDYITRKELFKHLQLHQKVQLMEYKAISEFVKHKKKLRCLICSKSYSELTDLKSHVMEDHKEPYICPLCSGSFSKIYDFAHHTKSFHPEIEGQSVVDVLEAFSKLCKAWKCEECQLQFHEADKLALHQIEKHSPDTKPDLQFQCADCRRVFISQKGLTSHRRIHHSTESTEEQDVVEKGVMCLECRKICKDETALTSHMRLHSPERKYPCKFCDFRFATPEKRKAHAEIHTGDLKYVCFICEYQCSSENRLQKHKLSVKHSSMKEFLLTGKPLIEESSSSKKKKEKKKKKEKSMDSDSSVGEVSCDICGEKFSDETAMSEHKLTHPFIEFPNEDTPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -