Acon019299.1
Basic Information
- Insect
- Acrobasis consociella
- Gene Symbol
- -
- Assembly
- GCA_963555685.1
- Location
- OY743121.1:7135341-7158686[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.3 3.7e+02 2.8 0.2 2 20 6 25 5 27 0.86 2 13 1.4 1.2e+02 4.4 0.0 2 21 33 52 32 53 0.91 3 13 0.5 43 5.8 0.4 1 15 199 210 199 219 0.76 4 13 9.2 7.8e+02 1.8 1.2 2 19 310 327 309 327 0.87 5 13 1.9e-05 0.0016 19.7 0.8 1 23 418 440 418 440 0.98 6 13 1 89 4.8 4.1 1 23 453 475 453 475 0.98 7 13 2.9e-05 0.0025 19.1 1.0 3 23 531 551 529 551 0.96 8 13 0.021 1.8 10.2 3.4 1 23 567 589 567 589 0.97 9 13 1.9e-05 0.0016 19.7 7.2 1 23 595 617 595 617 0.97 10 13 0.00035 0.03 15.7 5.7 1 23 623 645 623 645 0.98 11 13 9.4e-05 0.008 17.5 1.5 1 21 651 671 651 673 0.93 12 13 6.8e-05 0.0058 18.0 0.9 1 23 677 699 677 699 0.98 13 13 0.00051 0.043 15.2 0.5 1 23 707 730 707 731 0.96
Sequence Information
- Coding Sequence
- ATGGGAGAAGTATTGAAATGTCCTCTCTGTTGTACTCAGACCTTTGAGTCTAAATTGGCACTTATTGAGCATTTAGCAGGGGTGCTGTCCAACATAAGATGTCCCATATGTGATAATAAATGGTCTTCCATAGCTCACCTTATTGAGCACCTAAACCTGGATAACTGCTCAGCTCAAATGTTTGATGCTCAGACGGAAAACCAAGAGAATATGATTGATGTTAAGCCATGTACTTCTGGAGAGCAAATTAATGATAATGCAAATCAAGATGAAGTATTTGCCCAAATAAGTGATAAAGAGGCAAATGAAAGTTTAGATATAACAGATAACAAAATGTATGCAGAACTGATCAGCAAGCACATGATGAAGCCGTGCCTTCAGACGCAGGAGTTGAAGTTTGTAGAGGAGAACGGTCAAAGCCGGTATGTGTTTATGGAAGAGATGGAGTCAGACTTGGATAGTGGCAGCAAAGTGGTCACGAAACTGAATCATGATGGGACTATATCAATGACTACAGTTGCAGATATGAAACTGGACACAGACAGTATGATAACTCCTTCAGAAAATGAATCGGAGGAGACTCAAGAAGAGATTTATAGCTGCAACTCATGTGGAGTGTCATTCTCTTCTGTGATCGAACATATACAGAAATATCACAATGATCAAGATGTTGTGCTTGAGGAGCCAATAGATTCAGATGATGTCTCAGTTCTTCAGCAAACCCATAGTGCCGAAGTAGAATATGACCCCATGATGACGGAAGGCAGTATAAATAACAGTAATTTCACGTCACGACGCATGATCACGGATACCGGCGATATAGTGGAGGCTCCCATTGCAATGAAGGCTACGGATGATGGCGATTCATACCACAAGGTGGTAATGAAGCAAGTGCAAACTCAGTCCGGCGACAAAATGAAGATGTACCACTGCATTTCTTGCAATGTTTACTTCTCCTCGCTGTCAGACTTTAAAGTACACCCGTGTACTCTTGCATCGGAGAAGGCAAAGGAACCTGAGAAAACAGCCAGAGGTCCGGCGAGGCGGTACGTCCAAATAGACCAGTTTTGTGACAGTCACATCAAAGACATTAAGCCAAGTAATGaaaaagaTGGCCCATTCCACAAAGCGGTAGTAAAAGAAATCGAATCGAGTGGGGGCGAAAAAGTGAAGATGTTTCAGTGCATTGTGTGCCACGTCTGCGTCACGGATCTGGCTGATATGAAGACCGCGCCCTGCAAATCTTTTAAATATTCTTGCCCACATTGTCCTGTGGCGTATGAAAACGCGAAATCCCTGTGTGCTCACATGAAGGTGCACAAAATACATAAAGaaacTAACGCAGAAACCATGTCGTACAACTGCGAGATCTGTTGCACAATGTTCCTAACTAACAAATCTTTGAAATTGCACAAAAGAATGCACGACCCTGTTAAATCCCGTCCGATAGATCCCCCAGTCAGAACAATAGACGGCAACATAGAAGTCACAGACGAGGCTCGGTACTTGTGCAACATTTGCAATAAGTTGATACCCGAAGACTATCGTACCATACATCAACACTCACACAAGTCGAGCAACAAAATGAACTGCActatatgtaataaaaagttTACTTCTACCGAATATTTGGAGATGCATATGAAGGCGCATAACATGAACAAGattCCTGAAAATAAGACTGGCAAGTCACTTCCATACTGCTGTGTGTTCTGCCCGCGTCGGTTCGCAAGACCGCACGAAAAGGTCAAACACGAAAGAATTCACACAGGAGAAAAGCCGCATTGCTGTGAGATATGCGGTAAGAGCTTCCGCGTGTCTTACTGCCTGACTCTGCACATGCGGACACACACCGGCGCGCGGCCCTACGAGTGTCCACACTGCGGCAAGCGGTTCAAAGCACACAGCGTATATAACCACCACCTCCTGACGCACTCGGAAAAGCGAGCGTACAAGTGCCCGATCTGCCCAAAAGCGTTTAAGACGTCTGTGCAACTCGCGGGACACAAGAAATGTCACACCAAACCGTTTTCCTGCCAACACTGTAACAGGCCCTTCGCATCTCTATACGCAGTCCGAGTGCACATGGAAACGCACGCACGGCAAAACAACCTCAAGTTCACGTGTCCTTTGTGTGGGGCGCGGTACGCCCGAGCGTTCGCCCTGAAGGACCATGTCAAACAACAACACCATCTTGAAGCGGACGCTTTAGAGAAATTGCAGCCTGAAGTGGAGAAAGACTGGGTAGTTGCCGATAGTGTGGAATCTGAATTGATCGAGACGCAGAGTATTAAACACGACATCCAAGAGGCGGACATACCTACGTCTAAGGAGAATTCGTTGATAACGATCCTCGACATGAACGAAGAGATGATTGTGCCGTGA
- Protein Sequence
- MGEVLKCPLCCTQTFESKLALIEHLAGVLSNIRCPICDNKWSSIAHLIEHLNLDNCSAQMFDAQTENQENMIDVKPCTSGEQINDNANQDEVFAQISDKEANESLDITDNKMYAELISKHMMKPCLQTQELKFVEENGQSRYVFMEEMESDLDSGSKVVTKLNHDGTISMTTVADMKLDTDSMITPSENESEETQEEIYSCNSCGVSFSSVIEHIQKYHNDQDVVLEEPIDSDDVSVLQQTHSAEVEYDPMMTEGSINNSNFTSRRMITDTGDIVEAPIAMKATDDGDSYHKVVMKQVQTQSGDKMKMYHCISCNVYFSSLSDFKVHPCTLASEKAKEPEKTARGPARRYVQIDQFCDSHIKDIKPSNEKDGPFHKAVVKEIESSGGEKVKMFQCIVCHVCVTDLADMKTAPCKSFKYSCPHCPVAYENAKSLCAHMKVHKIHKETNAETMSYNCEICCTMFLTNKSLKLHKRMHDPVKSRPIDPPVRTIDGNIEVTDEARYLCNICNKLIPEDYRTIHQHSHKSSNKMNCTICNKKFTSTEYLEMHMKAHNMNKIPENKTGKSLPYCCVFCPRRFARPHEKVKHERIHTGEKPHCCEICGKSFRVSYCLTLHMRTHTGARPYECPHCGKRFKAHSVYNHHLLTHSEKRAYKCPICPKAFKTSVQLAGHKKCHTKPFSCQHCNRPFASLYAVRVHMETHARQNNLKFTCPLCGARYARAFALKDHVKQQHHLEADALEKLQPEVEKDWVVADSVESELIETQSIKHDIQEADIPTSKENSLITILDMNEEMIVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -