Acon028126.1
Basic Information
- Insect
- Acrobasis consociella
- Gene Symbol
- -
- Assembly
- GCA_963555685.1
- Location
- OY743129.1:9345499-9359502[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.032 2.7 9.6 1.1 1 23 232 254 232 254 0.96 2 16 0.045 3.8 9.1 0.1 2 23 283 305 282 305 0.93 3 16 0.014 1.2 10.7 0.1 2 23 326 348 325 348 0.94 4 16 0.00095 0.08 14.4 1.8 2 23 354 376 353 376 0.95 5 16 0.0013 0.11 14.0 1.4 1 23 381 404 381 404 0.96 6 16 1.7 1.5e+02 4.1 0.1 3 23 408 429 406 429 0.92 7 16 0.012 1 10.9 1.0 2 21 436 455 435 456 0.93 8 16 0.0095 0.81 11.2 0.5 1 23 514 537 514 537 0.93 9 16 0.076 6.4 8.4 0.1 3 23 566 587 564 587 0.94 10 16 0.046 3.9 9.1 0.2 3 23 611 633 609 633 0.94 11 16 0.00065 0.055 14.9 0.6 3 20 640 657 638 661 0.90 12 16 0.01 0.88 11.1 0.4 1 23 666 689 666 689 0.97 13 16 0.00017 0.014 16.7 0.4 2 23 695 717 695 717 0.94 14 16 4.6e-05 0.0039 18.5 4.9 1 23 721 744 721 744 0.97 15 16 0.00021 0.018 16.4 0.6 2 23 751 772 750 772 0.96 16 16 0.0058 0.49 11.9 2.3 1 23 778 800 778 800 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTCGACGAGATAGTCGTAAAAGAGAGCCCGGGGCTTTGCCGGTGCTGTCTCTCAGAAGGCTGCTACAAAGACATGGGCACGGAGTATACTTGGATGAATGAAAATGAAGTTTATGCGGATATGCTGTTAGAATGTTTCGATATTGGCATTTCCCAACATAATGAAGGACCAAATGGCCCCAACAGACTGATCTGCGAAGTGTGCATCACAAGACTGCGGGATGCCTGCAACTTCAAGAAGCAAGTGCTGGACTCGGAGAAGAAGTTCATTGATATGATCGGCAGAGGGGAATTCAGACCAAAAGTGCTCATCTACCAGGCCCAGATGAAGGCGGAGGCAGACGACTTGGGCACTACCGAGGTGGAATTCTTGGACGACGATATGGACTTCGTCGACGCCGATGACCTTCCACTCAAGCCTCCAGAAGAGCCAAGTGTATCAGACATCACCGTATCCACCCTCCCGGTGAAGAACAAGCGCGGACGGCCGAGGAAGAGCGTGGTGAAGACGGAGAAGAAGGCGAAAGTCGCCAAAATGGAGGACAAGGCGAAATCCTCCAAGTCACTTGTTAAAGATGTAAAAACCCGGAAATACAAGGGCTGCGAATCGTCCTCGATGCGCAGGCGACGGAACCTCCAAATACTGTTCAACAACACTAGCATCATACCCTTTAAGTGGAGGGGCAAGTACCTCTGCTTCTATTGCAGCAAAGATATAGCTGAGTACTCAGAATTACGAAAACACACCAAATCTCACGGCAACTGCTCAACCAAAGATCATTCCCTCAAAGTACTGAAAGGAGGACAGAATATGGAAATCAAAATAGACGTATCTGACATTACTTGTGACATTTGCAACGAACCTTTTCCGTCTTTTGACGAAATATTAACCCATTTGTACGTGAAACATAAGATAGAGTACGATAAAGGAGTAGACATGGCTATAGAGGAATATAGGCTAGTTGATCTCACGTGTCTAGTATGTGGAGAGAAATTTGCGTATTTCGGCTATTTAGTATCTCATGTTAATAATAATCACCCGAAAAACTGTCTTATTTGCGATAAGTGTAATCAGAACTTCAATAAAAAACGAGATTTGTTTTCTCACATCAAGAATTATCATAGAGAAGGAGGTTATAAATGTGAAATGTGCCCACAGAGTTTCAGTTCGTTGAATATATTACGGAAACATCGAAACAATAGACATCTTACTATTTGTAGTATATGTCAATTGAAATTGCCGTCTGCCGCTctgaaacaaaaacatatagAATTAGAACACCCTGATGATGGATCACTGCAATGTGACAATTGCGAAAAGGAGTTTCACACAAAGCAAGGCCTTAAAATGCACGCTAAGAAATGCAAAGGCGAAGAAGAATTGTTTGAAATTATTAAGAAAGAAGGTTATGATATGGATCTAGATGATAATCACGAAGAAATCAAAAGGCCCAGTGTCAAACAGATTCGTGAAAACATAGTTATAGTTATAAACATGTCAACGGCCATaccttttaatttttacaagaaTAAGTTTAACTGTTTCTATTGTTCACAAGATTTCGCTGATTCTGATAGTATGAGAAATCATACGGTAGTGGAACACCCAATTTGTGATGTTAAAGAAAAATGCATTAAGAAATGTCGAGAATCTGTAGCTTGTGTAAAAATTGACATATCTACACTTGCTTGTAAGATCTGCTTTGAATCTATGACTGATTTGGACAATTTATTAGATCATTTGATTGTTAAACACGAAGCTAACTACGATAAAAGCATAACAACATGTTTACAACCTTATAGACTCGTCAAAGATCACATGGCTTGCCCAAATTGTCCTGGAGAGGTGTTCAGATTCTTCGGAACGTTATTAAAACACATGAATAagaaacatacaaataataatataatttgtgtGTATTGTGGTCAAACGTTTCGAAGAGATCAGAATTTGAGAGTCCATATTTGGCGACATCACCGCGACGGTAGattcaaatgtaatatatgCGGAGCGGAATGTAATATACCCTCAAGGTTGTACATGCACATGGCAAAAGCCCACGGGGTAAAAGCAGCAAAATGTCCCAAATGCCCTGAATCTTTCTCAACGCAGTATTTAAGACAAAAGCATTTAATAGAAGCTCACGATTCGGGACATAAGTGCACTTACTGCGGTAAACTTTTTACTAGAAACTCTTTCATGCGAGATCATATTAGACGAACTCATTTGAAAGAGAAGAATGTAGAATGTTCCATTTGTAATAtgaagttttttaataatattctcTTAAGGCGCCATATGGTCAAGCATAGCGGGGAGAAGAATTTTCATTGCGATGTGTGTGGAGAAAGGTTTTTCTGGAGGAAAAGCCTGCGCACGCATATGGCTAGGCATAATAAACACTTGCACGCTTTACAGTTGTAG
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDMGTEYTWMNENEVYADMLLECFDIGISQHNEGPNGPNRLICEVCITRLRDACNFKKQVLDSEKKFIDMIGRGEFRPKVLIYQAQMKAEADDLGTTEVEFLDDDMDFVDADDLPLKPPEEPSVSDITVSTLPVKNKRGRPRKSVVKTEKKAKVAKMEDKAKSSKSLVKDVKTRKYKGCESSSMRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDIAEYSELRKHTKSHGNCSTKDHSLKVLKGGQNMEIKIDVSDITCDICNEPFPSFDEILTHLYVKHKIEYDKGVDMAIEEYRLVDLTCLVCGEKFAYFGYLVSHVNNNHPKNCLICDKCNQNFNKKRDLFSHIKNYHREGGYKCEMCPQSFSSLNILRKHRNNRHLTICSICQLKLPSAALKQKHIELEHPDDGSLQCDNCEKEFHTKQGLKMHAKKCKGEEELFEIIKKEGYDMDLDDNHEEIKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSQDFADSDSMRNHTVVEHPICDVKEKCIKKCRESVACVKIDISTLACKICFESMTDLDNLLDHLIVKHEANYDKSITTCLQPYRLVKDHMACPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKAHGVKAAKCPKCPESFSTQYLRQKHLIEAHDSGHKCTYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMARHNKHLHALQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00013343;
- 90% Identity
- iTF_00720736;
- 80% Identity
- -