Acon028117.2
Basic Information
- Insect
- Acrobasis consociella
- Gene Symbol
- -
- Assembly
- GCA_963555685.1
- Location
- OY743129.1:9247642-9271072[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.022 1.9 10.0 0.1 1 20 215 234 215 236 0.95 2 19 0.26 22 6.7 1.3 2 23 264 286 263 287 0.91 3 19 1.6 1.4e+02 4.2 3.4 1 23 309 331 309 331 0.97 4 19 0.0017 0.15 13.6 0.8 1 23 335 357 335 357 0.98 5 19 0.015 1.2 10.6 1.4 1 23 362 385 362 385 0.92 6 19 0.0087 0.74 11.3 0.7 2 23 393 415 392 415 0.93 7 19 0.0017 0.14 13.6 6.1 1 23 422 444 422 445 0.95 8 19 0.0049 0.41 12.1 1.1 1 23 451 473 451 473 0.97 9 19 1.6e-06 0.00014 23.1 3.1 2 23 480 501 479 501 0.96 10 19 4.4e-05 0.0038 18.6 4.4 1 23 507 529 507 529 0.98 11 19 0.12 10 7.7 0.9 1 23 636 659 636 659 0.90 12 19 1.2 1e+02 4.6 0.1 2 23 685 707 684 707 0.92 13 19 0.048 4.1 9.0 4.0 2 23 731 752 730 752 0.96 14 19 0.00084 0.071 14.5 0.3 1 23 756 778 756 778 0.97 15 19 0.0043 0.37 12.3 0.7 1 23 785 808 785 808 0.96 16 19 0.0036 0.31 12.5 1.0 2 23 816 838 815 838 0.94 17 19 3.4e-05 0.0029 18.9 1.7 2 23 844 866 843 866 0.96 18 19 0.77 66 5.2 0.9 1 23 872 895 872 895 0.90 19 19 0.00017 0.014 16.7 0.9 1 23 901 924 901 924 0.98
Sequence Information
- Coding Sequence
- ATGGACTCTAGAATAAATAATGGCATGTGCCGGTGTTGTGCTTCCGAAGGGACGTTCAAAGATTTGGCTAGCACCTATCACTGGATGGGCGAGGAAGAAATTTATGCCGAAATGCTGAAAGAATGCTTTGATATTCATCTCAGTTCTGCGGAGGAAGGAGATGAAGGCGGCATATGTGAAGTATGCATCACGCAGCTCCGGAACGCGTCCAACTTCAAGAAGCAGGTGCTACACACGGAGAAACAGTTCAAGAAACTACTGCAAGACAAATTAATGAAAAATAGCATAGTGAAGGTGGAAGTGCCTGGGCCAGACGAGGATGCTCTCGAATCGGACAATGACATAACTGAAGACTTCTCGGGAACAGAATTCGAAATCCCAATCAAAGAAGAGGAGGTTCTAGAAGAACCCAAGACCAGAAAACGGGCTGCGAAGGCCACCACTTCCCGCGCAAAGAAAGCTAAGACTGAAGCCGGTGAATCGTCCGCTAAACGAACGGACGGCGACGCGCCCAagcgaaagaaaaagaaaaaaaagggcGACGTAAGCGCGACTCCGGAACGCGTAGAGCACAGGGTCAACCTTACTGCCATCCTGCAGTTTTCCAACGCCAGTCCGTTCCGAGACAAGACCATACGAGGCTTCTCCTGCCTCTACTGCGCTAAGGCGTTCCAAAACATAGACGATCTCAGAGCACACACCGCGCTCCCGTCGGAGAAAGAGAAACTCAACTCCATGATCGATTACAAACTCAGCTACAACCCTATCAAACTAGACATTACGAATCTCAAGTGCACAGTATGCGATCTCCCCTTGAGAGATCTTAATTGTCTGAAAGACCATTTAGTTAACGTCCATCATAAAACTATACATAAGCAAATTAAAGATATCATTCTACCGTTCCGCTTGGAGAATGGGCAGAATTTCACTTGTGATATATGTTCCGCTATTCATGTTTCCTTCAAGAATCTGTATCACCACATGAGCAGTCACTACAGGAATTATTGTTGCAAGAAATGCGGTGCTGGTTACATCACTATCGCAGCGTTGAGGAAACACGGGAAGACACACGCTCAAGGCATATTCCCTTGCAGTTATTGTGAGAAATCGTACACGTCTTTGACTAAGAAGCGTAATCACGAGAAGGGCGTGCATACTGGCGGTTGGCTGAGGAATAAATGTCCACACTGCCCGAAAATATTCGTTAGTTACTACGACCGTAGCGAGCACTTAGTTAAAGTACACAACGAAACGCCGATAATATACCCCTGCAACGCGTGTAGTAAAACCTACAAGAAGAAATTTGAATTGAACCGCCATATAAAACACCATCATTTGCAGCAACGTAGTTTCATGTGCGACAAATGCAATGCGAAGTTCTTTTCTAAGCGCGGATTGGTCGATCACCTCTCGAGACATACGGGGGGCGAAGTCTGTATATGTAATGTGTGTGGGAAATCTTTCTCGAGGTCGCGAACTTTAAAAGAGCACATGAAACTACACGAAGACGACAAGAGGTACCAATGCGAGATTTGCAAGAAGACGTTCATGCAGAAATGTAGCTTGAAGAGTCACGTGAGACTGCACCAGGACGATTTGGAGATATTCAAGGAGTTTGACGATGTGAAGCATTTGATTGATAACAGAGAGTTGACGTTGAAGGAGATCGCAGCGGAGAGTAGGAAGAGGGAGCAAGCGGAGAAGGTTAAGGGGGATTTTGCAGGGTTGGgTAAGCTGGCGTCAAAAAGACGAAAAGCTATTAAGGAGGAAGGTGAGAGTGACTTCATATTCGATGTAGTGTACCGCGAAAAACAAGTGCCGGAGATGAAGAAGCAATGGCACAACCTCAGCGTACTGCTGAAGTACTCGAACGCCACGCCCTTCAAAGATAGAAACGACGCGGGGTACATTTGTGCGTATTGCTACAAAACATTCCCAGACGCACAGATACTGAGGCTTCACACACACAACGATCATAATAGAGATAGACCTTCGTACAAAGCCGGCACAGGAATCGCTAACTTCGTAGCTTTACTAGATATAGTCGATCTGAAATGCACGCTTTGCAACCAGCCAATGGACAGCTTGAACGATCTCACAGAACATCTAGCTCAGATCCACGGCAAAGAATTCTACGAAGGCATCACGGACTACTTCCAACCGTACAAACTGACGAACGAACAGCAACTCAACTGCTGTCTGTGCGACGAAATCTTCCATAATATGAAGCTGTTGATGCAGCACATGAACAAACACTACAGGAACTTCATTTGCACCGTGTGCGGTGCGGGTTTCGTCAACAGTTTCCGCCTGAACAGGCATGAGACCACgcacgagaagaagaagtcaAGTTTCCCCTGCAAACATTGTGGGCAAATCTTCGCAGCGGAATCTAAAAGAAAAGCTCACATTTACACTGACCATAAAGGCATAGCTGGTGACAGCGTCTGCCAAATTTGCAAGGCTAGGTTCAAGAATTATTATCAGAAAACCAGGCACATGATTCAAGTTCACAACGCTGAGGGTATTAAATGCGACATGTGTGACAAgaaatttcatttgaaatcGAATCTGATGCTTCACATGCGCGGTGTACATCTAAAAGAGCGGCCGTACGAATGTTCAGTTTGCAGTATGGGATTCTTTGTAAAACGGCACATGTTGGGACACTACCTAGCGACGCACACCAACGAGCGGAAATTCAAGTGTGAAGTGTGTGGAAAGGCGTATGCGACGCAGAACAGTAAGGGAAAACACATGAAGAAGAACCACGGGATATCTAAGAGTTCTATGATGGCTCAGAGCATGCCGAAATGA
- Protein Sequence
- MDSRINNGMCRCCASEGTFKDLASTYHWMGEEEIYAEMLKECFDIHLSSAEEGDEGGICEVCITQLRNASNFKKQVLHTEKQFKKLLQDKLMKNSIVKVEVPGPDEDALESDNDITEDFSGTEFEIPIKEEEVLEEPKTRKRAAKATTSRAKKAKTEAGESSAKRTDGDAPKRKKKKKKGDVSATPERVEHRVNLTAILQFSNASPFRDKTIRGFSCLYCAKAFQNIDDLRAHTALPSEKEKLNSMIDYKLSYNPIKLDITNLKCTVCDLPLRDLNCLKDHLVNVHHKTIHKQIKDIILPFRLENGQNFTCDICSAIHVSFKNLYHHMSSHYRNYCCKKCGAGYITIAALRKHGKTHAQGIFPCSYCEKSYTSLTKKRNHEKGVHTGGWLRNKCPHCPKIFVSYYDRSEHLVKVHNETPIIYPCNACSKTYKKKFELNRHIKHHHLQQRSFMCDKCNAKFFSKRGLVDHLSRHTGGEVCICNVCGKSFSRSRTLKEHMKLHEDDKRYQCEICKKTFMQKCSLKSHVRLHQDDLEIFKEFDDVKHLIDNRELTLKEIAAESRKREQAEKVKGDFAGLGKLASKRRKAIKEEGESDFIFDVVYREKQVPEMKKQWHNLSVLLKYSNATPFKDRNDAGYICAYCYKTFPDAQILRLHTHNDHNRDRPSYKAGTGIANFVALLDIVDLKCTLCNQPMDSLNDLTEHLAQIHGKEFYEGITDYFQPYKLTNEQQLNCCLCDEIFHNMKLLMQHMNKHYRNFICTVCGAGFVNSFRLNRHETTHEKKKSSFPCKHCGQIFAAESKRKAHIYTDHKGIAGDSVCQICKARFKNYYQKTRHMIQVHNAEGIKCDMCDKKFHLKSNLMLHMRGVHLKERPYECSVCSMGFFVKRHMLGHYLATHTNERKFKCEVCGKAYATQNSKGKHMKKNHGISKSSMMAQSMPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -