Acon030421.1
Basic Information
- Insect
- Acrobasis consociella
- Gene Symbol
- -
- Assembly
- GCA_963555685.1
- Location
- OY743132.1:8041158-8047314[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0004 0.034 15.5 0.5 1 23 17 39 17 39 0.98 2 13 0.5 42 5.8 0.4 1 23 77 98 77 98 0.96 3 13 0.26 22 6.7 5.0 1 23 139 161 139 161 0.98 4 13 1.3e-06 0.00011 23.3 3.2 1 23 164 186 164 186 0.98 5 13 0.0046 0.39 12.2 0.5 1 23 192 214 192 214 0.92 6 13 0.00072 0.062 14.7 6.7 1 23 220 242 220 242 0.98 7 13 0.00036 0.031 15.7 3.0 1 23 248 270 248 270 0.98 8 13 4.5e-07 3.8e-05 24.8 0.6 1 23 276 299 276 299 0.98 9 13 0.0013 0.11 13.9 3.5 1 23 308 330 308 330 0.95 10 13 3.8e-05 0.0032 18.8 3.0 1 23 344 367 344 367 0.97 11 13 0.00015 0.013 16.9 0.5 1 23 383 405 383 405 0.97 12 13 3.5e-05 0.0029 18.9 5.5 1 23 411 433 411 433 0.98 13 13 5.9e-07 5e-05 24.5 1.1 1 23 439 461 439 461 0.99
Sequence Information
- Coding Sequence
- ATGTTCAGACAACATAATATTGGAGAAAAAGTTGAAAGAACTGATCAGTTTCAGTGCGACATTTGCGGTCTGAGATGTGCTTTTCGCAGCGTTTTGGAGAATCACTTACTCGTGCACTCGGGTATATTCCTCGCGACGGTTCCCAATACTGAACAAATTCAAGACGCGGAAGGAGAAACCAAACGCACTCGGTCTCTAGAATATGTTTCAGTAGAAAGTCAAGGACTCTACACTTGCCAGTTCTGTCAAATTACTTTGACACTACCAGAAATGCAAGCACACCAAAAGGAACATAAGCCTTTTGAATGTATTCCCCCTGCGACGGTTCCCAATACTGAAAAAGCTGAAGACGCGGAAACGGCACACAAACGCACTTGTTCCTTAGAATGTGTGAGAGTAGAGGACCAACGACAGTACACGTGCCAGTTCTGTCACATAACGTTGCACAAGGAAAAgcaaatgcgcgcgcatttaaGAGAACATAAGCCTTTTGAATGTTCAGTTTGTCACAAAAGATTTGTAAATTGGATGAGCTTAAAGCGGCATTATATgacacatactggcgagaaacctcACGTGTGTAAAGATTGTGGTGCAAGGTTCGGTAGTAATACAGTTTTAAAAACACATTCGGTTATACATACGGGTGAAAGGCCTCACGAATGTGATATATGCCATCATAGATTTAGCCTTAAACGAAATTTAGTGAAACATCTATCAACACACAcgggcgagaaaccatatgaatgtgaatATTGCCATCGTAGGTTCCGCGAGAAATTTCCTTTTACCATTCACGTACGAATACACACAGGCGAGAAACCTTTCCAATGCGAGGTTTGTGGCAAAGGTTTCAGTTCAAAAGGAGATTTGTCGTCACATTTAAAGAGAAAACATTTAATAGGACACACTGAGAAACCTTTTCTATGTAACATCTGTAGTAAAAGCTTTAGTTGTAACAGGGAGTTAGCCAAACATTTGAACAAACATAGCACCGGGGAGACCAGTACGAAAAAGGAGCCAAAACTGTACAAATGCGACGTGTGTGAACGTGTTTTGTCAACCAAATATCATTTGCGAGACCATATGTTCAAACAACATAATATTGGAGAAAAAGTAGAGAGATCTTATCAtaaaaagaaaccgtttgagtGTGACATTTGCGGTCTGAGGTGTGCTTTCCGCAGCCTTTTGGAGAAACACTTGGTCGTGCACACGggcgagaaaccatacgaatgtgaAGTGTGTCATAGGAGATTTAAACAAAAGAGCCACGTGAGAAACCATGCGAAAATGCACACTGGAGAGAGACCGTACGAATGCGATATTTGTCACCGTAAATTTGCTATAAATGGTAACTTGAAAGCTCATATGAAGACTCATACTGTTGGTGCCAGTTCAAGGCAAACTCTACTCTAA
- Protein Sequence
- MFRQHNIGEKVERTDQFQCDICGLRCAFRSVLENHLLVHSGIFLATVPNTEQIQDAEGETKRTRSLEYVSVESQGLYTCQFCQITLTLPEMQAHQKEHKPFECIPPATVPNTEKAEDAETAHKRTCSLECVRVEDQRQYTCQFCHITLHKEKQMRAHLREHKPFECSVCHKRFVNWMSLKRHYMTHTGEKPHVCKDCGARFGSNTVLKTHSVIHTGERPHECDICHHRFSLKRNLVKHLSTHTGEKPYECEYCHRRFREKFPFTIHVRIHTGEKPFQCEVCGKGFSSKGDLSSHLKRKHLIGHTEKPFLCNICSKSFSCNRELAKHLNKHSTGETSTKKEPKLYKCDVCERVLSTKYHLRDHMFKQHNIGEKVERSYHKKKPFECDICGLRCAFRSLLEKHLVVHTGEKPYECEVCHRRFKQKSHVRNHAKMHTGERPYECDICHRKFAINGNLKAHMKTHTVGASSRQTLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -