Basic Information

Insect: Acrobasis consociella
Gene Symbol: -
Assembly: GCA_963555685.1
Location: OY743107.1:21442172-21447212[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00024 0.02 16.3 0.7 2 23 220 241 219 241 0.97

2 15 8.7e-05 0.0074 17.6 3.7 2 23 253 274 252 274 0.97

3 15 0.01 0.87 11.1 1.9 1 21 280 300 280 302 0.94

4 15 1.2e-05 0.001 20.3 1.8 1 23 308 330 308 330 0.98

5 15 8.4e-05 0.0072 17.7 3.0 1 23 336 358 336 358 0.98

6 15 2.2e-05 0.0019 19.5 0.8 1 23 382 404 382 404 0.97

7 15 0.00026 0.022 16.1 4.3 1 23 410 432 410 432 0.98

8 15 0.00013 0.011 17.1 5.1 1 23 438 460 438 460 0.99

9 15 0.0016 0.13 13.7 0.3 1 23 466 488 466 488 0.99

10 15 0.0057 0.48 11.9 2.6 1 23 526 548 526 548 0.98

11 15 0.0012 0.1 14.1 2.7 1 23 554 576 554 576 0.94

12 15 0.00028 0.024 16.0 3.8 1 23 582 604 582 604 0.99

13 15 0.0006 0.051 15.0 4.7 1 23 610 632 610 632 0.98

14 15 3.4e-05 0.0029 18.9 1.1 1 23 653 675 653 675 0.99

15 15 0.00028 0.024 16.0 0.9 1 22 681 702 681 702 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00024	0.02	16.3	0.7	2	23	220	241	219	241	0.97
2	15	8.7e-05	0.0074	17.6	3.7	2	23	253	274	252	274	0.97
3	15	0.01	0.87	11.1	1.9	1	21	280	300	280	302	0.94
4	15	1.2e-05	0.001	20.3	1.8	1	23	308	330	308	330	0.98
5	15	8.4e-05	0.0072	17.7	3.0	1	23	336	358	336	358	0.98
6	15	2.2e-05	0.0019	19.5	0.8	1	23	382	404	382	404	0.97
7	15	0.00026	0.022	16.1	4.3	1	23	410	432	410	432	0.98
8	15	0.00013	0.011	17.1	5.1	1	23	438	460	438	460	0.99
9	15	0.0016	0.13	13.7	0.3	1	23	466	488	466	488	0.99
10	15	0.0057	0.48	11.9	2.6	1	23	526	548	526	548	0.98
11	15	0.0012	0.1	14.1	2.7	1	23	554	576	554	576	0.94
12	15	0.00028	0.024	16.0	3.8	1	23	582	604	582	604	0.99
13	15	0.0006	0.051	15.0	4.7	1	23	610	632	610	632	0.98
14	15	3.4e-05	0.0029	18.9	1.1	1	23	653	675	653	675	0.99
15	15	0.00028	0.024	16.0	0.9	1	22	681	702	681	702	0.97

Sequence Information

Coding Sequence: ATGAATTCCGACGATCACCCTATGGCTTTGATCCCTAACGAGGATATAAAGAAGGAGGTGGAGGTTCCAGTAGAGTTTGTCAGCCCAGAGGACGAACATGAGTGCATGGTTTGCCTGTCGAGAAGTTCCGATTGCTTCAATATCCATAATACCCACACCGGCGCATCAGGAACGCCTCTAAACGTTTTCATCGGTAAATTCACCAACACTGAGCTCCCGTTTTATCCAGAATTCGCTAAATACATCTGCAAGAAGTGTTTAGAAGGCATCAATGTTCTTGAGCAAGCTGAAATAGagtatttgaaattaaaaaatggtttccaATCAAGCCTACAAAAAAACCCTATGTTTTTAATGCCCCAGCCCGTTAAATTGAAATGTGTGAAGGATGAGAGTGGAAAGGAAGACAATTCAGAAGAACCTTGCCATGTAATGATAAGTCAGAATAAAAAAGAGGACTTGAATGTTGGGGAGTGTAGCAGCGTGGATCCTCTCAATCTTAATAGCAGCATCCAAGGAGAGAAAACCAGTTATGCACAGCCAAATAGTGGATCACAGATTCAAGGTGGCGTTTCCACTCAGCAATCAAAAGCCGAAAAACAAATCCAAGATAGAAGAAAAAGCAATGAACTACAGCCACCCGCCGAGGCGCGCCTCGAATGTAGCATTTGtttgaaaatgttaaaaaacGAGAGATCCTTGAAACGACATTTAAGAATACacggtataaaaaaatatatggatgAGGACCCGCTTAAATGCGACGTTTGCCAACGTCAGTTTAAGCGGAAATGTTCCTTGGCACGTCATTTGAAAATCCATACCGcagagaaaccatatgaatgtaacaTTTGTAATAATCGGTTTGGTGATGAGTCTACTTTGACTGAGCATTCAAGATGTCACACAGGCGAGAAACCCTTCAAGTGTCATAATTGTGTAGAACGGTTTAGTACTAATGATGACTTAATACAACATTTGAAAATACACACTGACGAGAAACCTTTCGTTTGCGACATCTGTCAACGCCGCTTTCAACATAAGTATAATTTAggattacatttaaaaacacaCGCTGCTGAGAGAGAGAAACGTGAATGTAATAGTTGTCAAATGAATTTAAAATGCCACCTTCACGAGGTTTATAAGTGTGACGTATGTCAGCGTCAGTTTGCTCAAAAGTATTCTTTGCAACAACACGCGAGTATTCACACCGGCGAGAAACCGTacgaatgtaatgtttgtcaaaaacGATTTCGTAAGAAGCATCTATTATCGAGTCATTCTAAAgtacatactggcgagaaaccttatgaatgtAATTTTTGTCAGCAAAAATTTGCTCATAAAAGTTCATTTCAAAGTCATGTAAGGCGACACACCGGTGAAACACCATACAAATGCACTTTCTGTGAACTTAGCTTCGTTGAAATTAATGAATTGAATATTCATTTACAAAGTCATGCTGAGTTTCCAGTTCAGTTCGAATGTGAGGCTTCAGCTCCGGACGCTGAACAACAATGTCAAGCTATAGCGGACTCAACCAACAAGATGCAAGAACTTGGTGAGAAACCCTATGAATGTAATTTTTGCTCAGATCGGTTTAGTGCTaggaaaaatttacaaagacatTTGTACAAACACACAGCAGAGAAGCGTTTTGTATGCGACATTTGTCAACGCACTTTCAATCGAAAGGATGGCTACCAGGAACATTGTAAAGTTCATAGAGGCGAGAAACCTTATGAGTGTAACGTTTGTCAACATCGGTTTGTACGAAAGTGGCAATTATCAAGTCATTTCAAAACACACACTCGCGAGAAACCTTACCAATGTCATTTATGTCAACAAAAATTTGCTCATAGCACGACCTTACTAAGCCATGTGCGGCTCCACTATGGCGAAATACCGCGTAAAAGGAATAGAAATACCAACAAGCAGAATGGCGAGACGCCGTACAAATGTGGAATGTGCCAGCGCCAGTTTACTGGCAAGTGGTATTTGCAAGAACACGTCAGGACACACACAGGGGAGAAACCGTATCAATGTAGCGTTTGCCAAAAACGGTTCATTTGGAAGCGTAACTTACAAAGTCATTTAAGGACTGTGTGTACGCAAGCTACGCAGTGA
Protein Sequence: MNSDDHPMALIPNEDIKKEVEVPVEFVSPEDEHECMVCLSRSSDCFNIHNTHTGASGTPLNVFIGKFTNTELPFYPEFAKYICKKCLEGINVLEQAEIEYLKLKNGFQSSLQKNPMFLMPQPVKLKCVKDESGKEDNSEEPCHVMISQNKKEDLNVGECSSVDPLNLNSSIQGEKTSYAQPNSGSQIQGGVSTQQSKAEKQIQDRRKSNELQPPAEARLECSICLKMLKNERSLKRHLRIHGIKKYMDEDPLKCDVCQRQFKRKCSLARHLKIHTAEKPYECNICNNRFGDESTLTEHSRCHTGEKPFKCHNCVERFSTNDDLIQHLKIHTDEKPFVCDICQRRFQHKYNLGLHLKTHAAEREKRECNSCQMNLKCHLHEVYKCDVCQRQFAQKYSLQQHASIHTGEKPYECNVCQKRFRKKHLLSSHSKVHTGEKPYECNFCQQKFAHKSSFQSHVRRHTGETPYKCTFCELSFVEINELNIHLQSHAEFPVQFECEASAPDAEQQCQAIADSTNKMQELGEKPYECNFCSDRFSARKNLQRHLYKHTAEKRFVCDICQRTFNRKDGYQEHCKVHRGEKPYECNVCQHRFVRKWQLSSHFKTHTREKPYQCHLCQQKFAHSTTLLSHVRLHYGEIPRKRNRNTNKQNGETPYKCGMCQRQFTGKWYLQEHVRTHTGEKPYQCSVCQKRFIWKRNLQSHLRTVCTQATQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -