Acon012906.1
Basic Information
- Insect
- Acrobasis consociella
- Gene Symbol
- -
- Assembly
- GCA_963555685.1
- Location
- OY743115.1:3188592-3193447[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0035 0.3 12.6 3.6 1 23 66 88 66 88 0.97 2 12 0.00081 0.069 14.6 0.0 1 23 109 131 109 131 0.94 3 12 5.3 4.5e+02 2.6 1.5 5 23 139 158 136 159 0.93 4 12 0.00029 0.024 16.0 0.7 2 23 246 267 245 267 0.96 5 12 3.6e-06 0.0003 22.0 0.1 1 23 273 295 273 295 0.97 6 12 2.9e-05 0.0024 19.1 0.2 1 23 300 322 300 322 0.98 7 12 5.1e-08 4.3e-06 27.8 0.2 1 23 328 350 328 350 0.98 8 12 4.3e-06 0.00037 21.7 0.5 1 23 356 378 356 378 0.98 9 12 1.1e-05 0.00095 20.4 3.2 1 23 384 406 384 406 0.98 10 12 4.8e-05 0.0041 18.4 0.4 1 20 412 431 412 433 0.95 11 12 0.0047 0.4 12.2 0.4 2 23 441 462 440 462 0.95 12 12 3.9e-05 0.0034 18.7 0.7 1 23 470 493 470 493 0.98
Sequence Information
- Coding Sequence
- ATGAGGAAGAGAGTGGTCAACGAAGTTCCAaagTGGCTGAATCCATATATAAAGTTGGAGATAATAGATGTGGATAAGTACGGCAATTCACAAAACTGTCTAGATGAGGATAATGATGTGAAATTGGAGAATGAATCTAATCAAGTCATTGAAGATACCAAAACCCTTCAAGTAGTACTGCAGAAAACCAAGATATTTGAATGCAAAGaatgttatttatgttttacTACGGAGAGAGATTACAGACTGCACCTGGTGAAGCATGCTGCGCCCATTGTGAAAACTGAATTTTCGTACGAAAAACACAGTAGTTATGTAAAAAAGTTCAAATGTCCAGACTGCGACCTGAGATTTGTGGCAGAGAGTACTTTGCTAGCCCACTCTGTTGTGCATCTCCCGTTCCCATACGTGTGCCACTGCGGCATCGGCTATAACAAGGAGGACGACTTCTTTGGCCACAAAAGACTGGTACATCATGAAACCCAAGAAAAGATCTGGCGACCTACAACCTCGTACGCGGGAAAGAAATTAAAGTCAGAGTTTTGCATCAAATCCGAACAAGTCCCACCCCAAAGCAACGTCGTCAAGACAAAATTAGGAGTTTTCATACCAAAGTctatcaaaaaaaataaaaagaagaaagttAAATCTGAGTTCAAGCccaaaaattattataacgTGATAATGCCTGACGTAAAACATGAGAAAATTTCAGTTGGCGGCCTCACGAAATGTGTGTGTCCAACGTGCAACAAGGTGTACGCTTCATACAGGGGTTTACAAGTTCACACTTTAAGCCACACTGGAGAGAAACCGTACGCGTGCGACGTTTGTCCGAAAACGTTTAGTCAGTCCGCAGCACTAAACGTACATAAACTAAAACATGACGGAGTGTAttttgaatgtaatatttgtctaAAACGACTCGCGCAAAAAGCCGCTTTAAAGTTACATATGCGAATTCACACGGGAGAAAAGCCTTATGATTGTGATTTCTGTGGAAAGGCCTTTAGCGACCCGAGCGCGTTTGCCCGCCATATCCGAACTCACACGGGGGACAAACGATACCAATGTACAGAATGCCCAATGCGCTTTTCTGACAAAAGCGGGCTGATAGTACACAGTAAGCGACACACCGGAATAAGAAACTTCAAATGCGAAATATGTGAAAGGAGATTCTATAGTAAAACTCAtctaaaagtacatttaagtgTACATGCCCCTCAGTATAAATATGAATGTGATTATTGTGGCAAACGTTTTGCAAAGAAGCACTACTTAGCAGGCCATATAGTTCGTTCTGGGAAACACTCTGCGTTGAAGTGCCCATTCTGTCCGAGAACATTTAGTAGTGCTTTAAGAAGAAGTATACATTTGAGGGTACATGACCAGTTTGAGTTTGCTGACTACAAATGTGACCATTGTGGAGAATCGTATGACGGAAAGGCGTCAATGATACAACATCTGAAAACTGAACATTCTTAG
- Protein Sequence
- MRKRVVNEVPKWLNPYIKLEIIDVDKYGNSQNCLDEDNDVKLENESNQVIEDTKTLQVVLQKTKIFECKECYLCFTTERDYRLHLVKHAAPIVKTEFSYEKHSSYVKKFKCPDCDLRFVAESTLLAHSVVHLPFPYVCHCGIGYNKEDDFFGHKRLVHHETQEKIWRPTTSYAGKKLKSEFCIKSEQVPPQSNVVKTKLGVFIPKSIKKNKKKKVKSEFKPKNYYNVIMPDVKHEKISVGGLTKCVCPTCNKVYASYRGLQVHTLSHTGEKPYACDVCPKTFSQSAALNVHKLKHDGVYFECNICLKRLAQKAALKLHMRIHTGEKPYDCDFCGKAFSDPSAFARHIRTHTGDKRYQCTECPMRFSDKSGLIVHSKRHTGIRNFKCEICERRFYSKTHLKVHLSVHAPQYKYECDYCGKRFAKKHYLAGHIVRSGKHSALKCPFCPRTFSSALRRSIHLRVHDQFEFADYKCDHCGESYDGKASMIQHLKTEHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00013322;
- 90% Identity
- -
- 80% Identity
- -