Basic Information

Insect: Acrobasis consociella
Gene Symbol: -
Assembly: GCA_963555685.1
Location: OY743104.1:10973810-10994263[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.073 6.2 8.4 1.1 1 20 181 200 181 202 0.93

2 13 0.0027 0.23 12.9 0.1 2 20 216 234 216 234 0.96

3 13 0.0023 0.19 13.2 3.8 1 23 277 299 277 299 0.97

4 13 0.069 5.8 8.5 0.0 2 21 371 390 370 393 0.88

5 13 0.089 7.6 8.1 0.2 2 21 399 418 398 419 0.92

6 13 0.0003 0.026 15.9 1.0 1 23 427 450 427 450 0.97

7 13 2.2e-06 0.00019 22.7 0.6 1 23 470 492 470 492 0.98

8 13 3.6e-07 3.1e-05 25.1 2.8 1 23 497 519 497 519 0.99

9 13 3.2e-07 2.7e-05 25.3 2.3 3 23 532 552 529 552 0.95

10 13 3.5e-05 0.003 18.9 3.2 1 23 558 580 558 580 0.99

11 13 1.3e-06 0.00011 23.4 1.6 2 23 587 608 586 608 0.96

12 13 1.7e-07 1.4e-05 26.2 1.5 1 23 614 636 614 636 0.99

13 13 0.00012 0.01 17.2 0.8 1 23 642 664 642 664 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.073	6.2	8.4	1.1	1	20	181	200	181	202	0.93
2	13	0.0027	0.23	12.9	0.1	2	20	216	234	216	234	0.96
3	13	0.0023	0.19	13.2	3.8	1	23	277	299	277	299	0.97
4	13	0.069	5.8	8.5	0.0	2	21	371	390	370	393	0.88
5	13	0.089	7.6	8.1	0.2	2	21	399	418	398	419	0.92
6	13	0.0003	0.026	15.9	1.0	1	23	427	450	427	450	0.97
7	13	2.2e-06	0.00019	22.7	0.6	1	23	470	492	470	492	0.98
8	13	3.6e-07	3.1e-05	25.1	2.8	1	23	497	519	497	519	0.99
9	13	3.2e-07	2.7e-05	25.3	2.3	3	23	532	552	529	552	0.95
10	13	3.5e-05	0.003	18.9	3.2	1	23	558	580	558	580	0.99
11	13	1.3e-06	0.00011	23.4	1.6	2	23	587	608	586	608	0.96
12	13	1.7e-07	1.4e-05	26.2	1.5	1	23	614	636	614	636	0.99
13	13	0.00012	0.01	17.2	0.8	1	23	642	664	642	664	0.98

Sequence Information

Coding Sequence: ATGCTCAAGAGGTTTAGCTCCGAGAAAATGTATGGAACAGAAGAAGCATGTGTGATGCTGATCCGgttgTTAGCTTTTAGTAAACATCATAACGATATGGCTTTGTCCTATAGtatcaaaaatgaaaatatgtgCAGGACATGTATGGGTAAAGAAAATCTTACTTCGTTATTTGATGTAATTGACGAGACCATGACCCTAGATTTTGTTATATCAGCAATTACTGGAGTGAAGatggaaaaagaggATGGGCTGCCATCAACTGTTTGCCTCATTTGCAAAGATAAGGCTATCACAgcctttaattttaaaagaaaatcccAGGATGTTGATGTTACATTGagagatttatttaaaaaagaaaagatagATTTAAAGAGTAATCAATCGAAAGGTACTTATgagCATTGCAACCAGATTAAAATGGAAGTTAGTATTGAAGATGATCAACTTGAGTCTCTAGATGATTGGGCCACTCTAAATGACCTGGAAGAtatggCTATAGTGAAAAATGAGGATGAGGAACTTGATCAGACACAATATCAATGTAAAAATTGCACAGTTGTTTTTGAATCTTACAAAAAGTATCAGGAACATTCAAAGGAAAAATGTGtaaaagTCGAAATTGAAGACGCTGGCAACAATTATTGTCCACTTTGTGGTACATTCTACTATGATGCCGTTAGTTTGACAAAGCACATGTGGGATTGCCATACTGATCTGATGGGGCCAAAGAAGAGGGGGAGACCGAGAAAACCATTGACCAGTGCAATACTCAGCAAATTGACTGAAAATGGATTCCATTTGAAATCAGATCAGGTGAAAAaatacagttgtactttttgtaataaagaGTTTAAAACCAAAGAAGATACTCATATCCATCAAATGGAACACAaagatTTTAAGCTGTTATTTTGTctattttgtaaaaagagttatctaaagaaaaaatattttgacattcATATATGCATCGACAATAAGAACAGCGAAGATAAGATCAAgcaagATCATGAAGAAgatacaaaacaaaattttctaaGTGAAATTACCCTTCAAGAATTATTAGATCCATATGATGCTGAGGAAAATAATATGTTAGTTCAAGTATGTCCTGTGTGCACCGGCGTATTTCGTTCGGAAGAGCAACTTGCTGACCataatgataatgaacatcCTGAACTCTCCCTTAGATGTAATCTATGCTCAAAGattttTGCTACGGTAAAGTCTGCCAGCCGCCACAGGAATATTTGTAAGCAGATCGAACGGAAGTTCAGATGCAGTACTTGCGGGCTCAAGTTTGCTTATGAGTTGTCTCTAAACAAGCACATATTGCGATATCATGAAGGTCAAAGTGTATCTCTTGCGTTTATGGAAACTAAGTCGAAGGAATCCAGACAATACCAATGTGATAATTGCAATAAGGTTTTTGACagAAAGGAGGCTCTTATTAAACACTCCAAAGTACATTCCGAAAAACACTATGAATGTGATGTGtgtaagaaaaaatttaatagaagCGATAATTTGCGATCCCACAAGCGGACGCACGAACCTCGCGACAAGACGAAGTTGACCACGTGCCTTTGCCTGTATTGCGGAAGAAGTTTCAACAATTCGTCCAACCTGATTGTGCACATGAGGCGACATACGGGAGAGAAACCGTATAAATGTGACTTTTGCGGAAaagGATTTCCGAGGTCTTCAGATCTACAATGCCATAGGAGATCACACACAGGAGAAAAGCCTTGTATTTGTGGCGTTTGTGGTAAAGGTTTTTCTCGCAGTAACAAGCTGTCGCGCCACATGCGCGTCCACACCGGAGTCAAGCCTTACAAGTGCACGTATTGCGACAAAGCGTTCTCCCAAAGCAACGACCTCACGCTGCACGTCAGAAGACATACCGGCGATAAACCATACATCTGCGAATTGTGTGGAGAGAGATTTATACAGGGCACGGCGTTACACAATCATAGACGCACTCACGGACATTACCCGCCTTCATCATCAGATACTCGATTAGAAACTATAACGTATACCGTTCAACGCATTGATCCTCCACAATAA
Protein Sequence: MLKRFSSEKMYGTEEACVMLIRLLAFSKHHNDMALSYSIKNENMCRTCMGKENLTSLFDVIDETMTLDFVISAITGVKMEKEDGLPSTVCLICKDKAITAFNFKRKSQDVDVTLRDLFKKEKIDLKSNQSKGTYEHCNQIKMEVSIEDDQLESLDDWATLNDLEDMAIVKNEDEELDQTQYQCKNCTVVFESYKKYQEHSKEKCVKVEIEDAGNNYCPLCGTFYYDAVSLTKHMWDCHTDLMGPKKRGRPRKPLTSAILSKLTENGFHLKSDQVKKYSCTFCNKEFKTKEDTHIHQMEHKDFKLLFCLFCKKSYLKKKYFDIHICIDNKNSEDKIKQDHEEDTKQNFLSEITLQELLDPYDAEENNMLVQVCPVCTGVFRSEEQLADHNDNEHPELSLRCNLCSKIFATVKSASRHRNICKQIERKFRCSTCGLKFAYELSLNKHILRYHEGQSVSLAFMETKSKESRQYQCDNCNKVFDRKEALIKHSKVHSEKHYECDVCKKKFNRSDNLRSHKRTHEPRDKTKLTTCLCLYCGRSFNNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCICGVCGKGFSRSNKLSRHMRVHTGVKPYKCTYCDKAFSQSNDLTLHVRRHTGDKPYICELCGERFIQGTALHNHRRTHGHYPPSSSDTRLETITYTVQRIDPPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -