Basic Information

Insect: Acrobasis consociella
Gene Symbol: -
Assembly: GCA_963555685.1
Location: OY743132.1:8615538-8640326[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5e-06 0.00042 21.5 0.2 2 23 220 241 220 241 0.97

2 12 1.8e-06 0.00015 22.9 1.3 1 23 247 269 247 269 0.99

3 12 6e-05 0.0051 18.1 1.4 1 19 275 293 275 297 0.93

4 12 0.00054 0.046 15.1 3.7 1 23 303 326 303 326 0.97

5 12 5e-06 0.00042 21.5 0.2 2 23 383 404 383 404 0.97

6 12 1.8e-06 0.00015 22.9 1.3 1 23 410 432 410 432 0.99

7 12 6e-05 0.0051 18.1 1.4 1 19 438 456 438 460 0.93

8 12 0.00054 0.046 15.1 3.7 1 23 466 489 466 489 0.97

9 12 5e-06 0.00042 21.5 0.2 2 23 541 562 541 562 0.97

10 12 1.8e-06 0.00015 22.9 1.3 1 23 568 590 568 590 0.99

11 12 6e-05 0.0051 18.1 1.4 1 19 596 614 596 618 0.93

12 12 0.00054 0.046 15.1 3.7 1 23 624 647 624 647 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5e-06	0.00042	21.5	0.2	2	23	220	241	220	241	0.97
2	12	1.8e-06	0.00015	22.9	1.3	1	23	247	269	247	269	0.99
3	12	6e-05	0.0051	18.1	1.4	1	19	275	293	275	297	0.93
4	12	0.00054	0.046	15.1	3.7	1	23	303	326	303	326	0.97
5	12	5e-06	0.00042	21.5	0.2	2	23	383	404	383	404	0.97
6	12	1.8e-06	0.00015	22.9	1.3	1	23	410	432	410	432	0.99
7	12	6e-05	0.0051	18.1	1.4	1	19	438	456	438	460	0.93
8	12	0.00054	0.046	15.1	3.7	1	23	466	489	466	489	0.97
9	12	5e-06	0.00042	21.5	0.2	2	23	541	562	541	562	0.97
10	12	1.8e-06	0.00015	22.9	1.3	1	23	568	590	568	590	0.99
11	12	6e-05	0.0051	18.1	1.4	1	19	596	614	596	618	0.93
12	12	0.00054	0.046	15.1	3.7	1	23	624	647	624	647	0.97

Sequence Information

Coding Sequence: ATGTTAGGCCTGGTTTGCCGACAAGTGTGGGGGGGGAAAAATGAGCCTGCTCATATTGCGGAAATGTTTAGGGACCATTTTAAAGTCGATTCACCACTGGGCCCCTCGATTCCTACCTTTGATAAGCCTTTGTGTCACGGGAAAGATAAACTAGTGTGTGTTACAGCAGAACAAGTTCGAAATGCTCTAAAAAATATGACTGGTGGCAGGTCTCCTGGACATGACGGCATTAGCGTTGAGCATCTTAAACATGCGGGTGTACACCTCCCGAGGGTTCTAGCTCTGTTTTTCACAATGTGTATCAGTCATTCTTATTTACCACGAGAAATGTTAAAAACCATTGTGGTGCCCATTGTGAAGAACAGAACTGGTGACATTTCGGACAAGAAAAATTATCGTCCAATCTCATTGGCAACGACTATTGCAAAAGTGCTGGACAGTGTGCTTAATTCTTACCTGAAAGAAATAGCTAACCTACATGATGCGCAGTTTGGGTTTCGGTCCGGACTATCTACTGAGAGTGCTATCAAGCCCCGCGGGCGCAACAGCCGCGCGCTGGACCCGTCGCTGCGGCGCTGGCGCGTCGTGGGCGAGGACGCGCACGACGTCGTCATGGAGCGGGAGGCGCCGCGCGGGGCGCCGCCCAAGCGGGGCGCCGTCTGCGAGGTCTGCGGGAAGAGCTTCCAGAACGCGGGCCTCCTGAAGTACCACCAGCGTATCCACTCCGGCGAGCGACCGTTCCAATGCACGCAGTGCTCCAAATCATTCACCACAAATCGGTTGTTAGAGGAACACGTTCGCGTCCACACCGGCGAGCGTCCGTACAAGTGTTCACACTGCTCCAAGGCGTTCAAGACCCTCGCTGCGCTTAACAGGCACGACCTGGTCCACAACGGTCTTCGTCGCCACGTATGCCAATTGTGCGACAAGACATTCCAAACGTCGTCCTGTGCTAAAGTGCACATCAAAACTGTGCATATGAAACTGCCCACGCCGCCCAGAGTGCGCAGACGCAGGAAGCCCTGCGGGCGCGGCAGCCGCGCGCTGGACCCGTCGCTGCGGCGCTGGCGCGTCGTGGGCGAGGACGCGCACGACGTCGTCATGGAGCGGGAGGCGCCGCGCGGGGCGCCGCCCAAGCGGGGCGCCGTCTGCGAGGTCTGCGGGAAGAGCTTCCAGAACGCGGGCCTCCTGAAGTACCACCAGCGTATCCACTCCGGCGAGCGACCGTTCCAATGCACGCAGTGCTCCAAATCATTCACCACAAACCGGTTGTTAGAGGAACACGTTCGCGTCCACACCGGCGAGCGTCCGTACAAGTGTTCGCACTGCTCCAAGGCGTTCAAGACCCTCGCCGCGCTCAACAGGCACGACCTGGTCCACAACGGTCTACGTCGCCACGTATGCCAACTGTGCGACAAGACCTTCCAAACGTCGTCCTGTGCTAAAGTGCACATCAAAACTGTGCACATGAAACTGCCCACGCCGCCCAGGAAGCCCTGCGGGCGCGGCAGCCGCGCGCTGGACCCGTCGCTGCGGCGCTGGCGCGTCGTGGGCGAGGACGCGCACGACGTCGTCATGGAGCGGGAGGCGCCGCGCGGGGCGCCGCCCAAGCGGGGCGCCGTCTGCGAGGTCTGCGGGAAGAGCTTCCAGAACGCGGGCCTCCTGAAGTACCACCAGCGTATCCACTCCGGCGAGCGACCGTTCCAATGCACGCAGTGCTCCAAATCATTCACCACAAATCGGTTGTTAGAGGAACACGTTCGCGTCCACACCGGCGAGCGTCCGTACAAGTGTTCGCACTGCTCCAAGGCGTTCAAGACGCTCGCCGCGCTCAACAGGCACGACCTGGTCCACAACGGTCTTCGTCGCCACGTATGCCAATTGTGCGACAAGACCTTCCAAACGTCGTCCTGTGCTAAAGTGCACATCAAAACTGTGCACATGAAACTGCCCACGCCGCCCAGAGTGCGCAGACGCAGGGTCAAAGACGAATAG
Protein Sequence: MLGLVCRQVWGGKNEPAHIAEMFRDHFKVDSPLGPSIPTFDKPLCHGKDKLVCVTAEQVRNALKNMTGGRSPGHDGISVEHLKHAGVHLPRVLALFFTMCISHSYLPREMLKTIVVPIVKNRTGDISDKKNYRPISLATTIAKVLDSVLNSYLKEIANLHDAQFGFRSGLSTESAIKPRGRNSRALDPSLRRWRVVGEDAHDVVMEREAPRGAPPKRGAVCEVCGKSFQNAGLLKYHQRIHSGERPFQCTQCSKSFTTNRLLEEHVRVHTGERPYKCSHCSKAFKTLAALNRHDLVHNGLRRHVCQLCDKTFQTSSCAKVHIKTVHMKLPTPPRVRRRRKPCGRGSRALDPSLRRWRVVGEDAHDVVMEREAPRGAPPKRGAVCEVCGKSFQNAGLLKYHQRIHSGERPFQCTQCSKSFTTNRLLEEHVRVHTGERPYKCSHCSKAFKTLAALNRHDLVHNGLRRHVCQLCDKTFQTSSCAKVHIKTVHMKLPTPPRKPCGRGSRALDPSLRRWRVVGEDAHDVVMEREAPRGAPPKRGAVCEVCGKSFQNAGLLKYHQRIHSGERPFQCTQCSKSFTTNRLLEEHVRVHTGERPYKCSHCSKAFKTLAALNRHDLVHNGLRRHVCQLCDKTFQTSSCAKVHIKTVHMKLPTPPRVRRRRVKDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -