Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0007 0.65 11.0 0.1 15 38 121 141 113 146 0.83

2 5 0.57 5.4e+02 1.7 0.2 18 28 155 165 149 180 0.81

3 5 0.011 11 7.1 0.3 18 29 181 192 171 203 0.83

4 5 0.0024 2.3 9.3 0.2 18 41 209 229 198 232 0.86

5 5 0.13 1.2e+02 3.7 0.9 14 29 233 248 229 260 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0007	0.65	11.0	0.1	15	38	121	141	113	146	0.83
2	5	0.57	5.4e+02	1.7	0.2	18	28	155	165	149	180	0.81
3	5	0.011	11	7.1	0.3	18	29	181	192	171	203	0.83
4	5	0.0024	2.3	9.3	0.2	18	41	209	229	198	232	0.86
5	5	0.13	1.2e+02	3.7	0.9	14	29	233	248	229	260	0.79

Coding Sequence: ATGTACGTTTTGCTGGTTGTCCCCAGAGCCCTGCGCCGCCGAGTATGCAGAGCTGGGAGCGCTGCTGAAGAACCTCCCGAACCCATCTATCAAACGGTCCAAACCGTCACTCCTCTACAATCAGTGGAGTACGCTGTCGAGCCACAGGTCAACTATGTTTACGAGACTGTCCCGCAAGTCTCCGGCGAACCGGCACCGGAGTACTCGATTGATCCGGCGCCAGCGGAGTACTCGATCGAGATCATTGACGCAGAACCCGAAGCCGAACTTGAAGTCCAGCACGATCAGGAGCCCAAACCTGATGACGCAGCCGGGACAAAGGAGGCAGAGGAGGCACCCGCTCCGACTAAGGAGAAACCAGCTAAGTTTGATTGTAATGAATGCGGCAAACGGTATGCGACATCTTCTAACCTGTCGCGACACAAGCAGACGCACCGCAGCTTGGACTCGGTTTCGGCGAAGCGGTGCGGCGAGTGCGGCAAGGCGTACGTGTCGATGCCGGCGCTGGCGATGCACGTGCTGACGCACCGCATGGGGCACGTGTGCGGCGTGTGCGGCAAGCAGTTCTCGCGGCCCTGGCTGCTGCGCGGCCACCTGCGCTCGCACACCGGCGAGAAGCCGTACAGCTGCGCGGCCTGCGGCAAGGCTTTCGCTGACCGCTCTAACTTGCGCGCGCACTTACAGACGCACTCCTCCGATAAGAAGTTCGAGTGCCCACGCTGCCACAAGAACTTTGCTCTCAAGAGCTACCTTAACAAGCACCAGGAGTCGGCGTGCGTGCGCTCTGACGACGAGTGA
Protein Sequence: MYVLLVVPRALRRRVCRAGSAAEEPPEPIYQTVQTVTPLQSVEYAVEPQVNYVYETVPQVSGEPAPEYSIDPAPAEYSIEIIDAEPEAELEVQHDQEPKPDDAAGTKEAEEAPAPTKEKPAKFDCNECGKRYATSSNLSRHKQTHRSLDSVSAKRCGECGKAYVSMPALAMHVLTHRMGHVCGVCGKQFSRPWLLRGHLRSHTGEKPYSCAACGKAFADRSNLRAHLQTHSSDKKFECPRCHKNFALKSYLNKHQESACVRSDDE

Sequence clustering based on sequence similarity using MMseqs2