Acon028407.1
Basic Information
- Insect
- Acrobasis consociella
- Gene Symbol
- -
- Assembly
- GCA_963555685.1
- Location
- OY743129.1:11105615-11107405[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-06 0.0005 20.7 0.0 3 35 27 58 25 64 0.86 2 2 1.2 5.1e+02 1.4 0.0 4 38 68 105 66 109 0.76
Sequence Information
- Coding Sequence
- ATGGTACGTGTTTATTGTAGAAAATACACTAACCACCGAAATGGCAAATCATATAGAGCATACCGAAGTTATTTGGCCGAGAACATGGAAAGCgctataaaaaatgttaaagggGCTATATTTTTCACCCAAGCAGCTGAACTTTATAATGTTCCTAAGAGCACCCTAAGTAGAAAACCCAGGAATATAAACTGTACTCAAGATATGGCCCTGGCCATCCGACTTTATTCTCACCTCACGAAGAAGAGACTACCACAAGCTAGAGCCGATGACATGGAAGGTATTGCAACATCTGTTTTAGTGGATATTCTAAAAGAAATGAGGAGCCCAAACCCATCCACAGAATCTAGACGCAAAAAGAGATGTGTTGTGGAACCTGGCAAGACCATCAGTGCAGAAGATTTGGTTCAATAG
- Protein Sequence
- MVRVYCRKYTNHRNGKSYRAYRSYLAENMESAIKNVKGAIFFTQAAELYNVPKSTLSRKPRNINCTQDMALAIRLYSHLTKKRLPQARADDMEGIATSVLVDILKEMRSPNPSTESRRKKRCVVEPGKTISAEDLVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -