Acon004470.1
Basic Information
- Insect
- Acrobasis consociella
- Gene Symbol
- -
- Assembly
- GCA_963555685.1
- Location
- OY743107.1:5948578-5949129[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-09 4.6e-07 30.4 0.0 1 37 14 50 14 57 0.95 2 2 0.38 1.6e+02 3.1 0.0 15 24 128 137 126 138 0.80
Sequence Information
- Coding Sequence
- ATGGCGCGGTACAAATCCAGAGGTATACGAGGCAAATGGACCGAAGACAACATGATAAAGGCGTTAGCGGCGGTAAAACGCGGCGTGATGAAAGTTTATACTGCCTCAAAACATTTTGATATACCGAGACGTACACTCAAGAGATATCTTACTGATAATAAGAAAGAAAAGTCATCCCTAGGAAGAAAAACATTACTCAGTAAAGAGCAAGAAAATGACCTCAAAGCTCGGATCTTGCGCTTGTGTAATGTTGGGTATCCCCTCACTCCACGTGTATTAAGGACCAGTGTTAAGACCTTCTGCAACATGAACAACATACCCGTATCAAGCAACAGTGCTATGATTGGCCGTGATTGGCTGAGGGGTTTCCTCAAACGTCATAAAGGCTTGAGCCAAAGAAAAGCACAAAATCTTAACCCAGCAAGAGCTCAAAAGCTCAACAAAATAGTAGTGgctgattattttgaaaaactccGTAAGGTCTTGGAAGACAACGATTTACTGAATAGCCCAGAAAGAATATTTAACATTGATGAGAAAGGGTGCCAGTAA
- Protein Sequence
- MARYKSRGIRGKWTEDNMIKALAAVKRGVMKVYTASKHFDIPRRTLKRYLTDNKKEKSSLGRKTLLSKEQENDLKARILRLCNVGYPLTPRVLRTSVKTFCNMNNIPVSSNSAMIGRDWLRGFLKRHKGLSQRKAQNLNPARAQKLNKIVVADYFEKLRKVLEDNDLLNSPERIFNIDEKGCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -