Acon021880.1
Basic Information
- Insect
- Acrobasis consociella
- Gene Symbol
- -
- Assembly
- GCA_963555685.1
- Location
- OY743124.1:5512309-5514132[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-11 5.8e-09 36.5 0.0 2 40 19 57 18 61 0.89
Sequence Information
- Coding Sequence
- ATGCCGCgagattacaaaaaaaaaccaggAACGAGAAGATATATAAACTACAGTGACGACTTACTAAATGAAGCTTTGTCAAAAGTAGTGACAGGAGCCATATCTTTACGGGCTGCATCCAGAGAATATGATATTCCTTTTGGAACtctatacaataaatataaaggaaACTTTACTAGAACTCCAGGTGCACAACCCATTTTTAGCAATACCGAAGAAAAATCTCTGTTGAAGGCGGCAGCAAAATGTTCTGACTGGGGTTATCCTTTAACCGCACTTGATTTGAGGTTTTTAGCAAAAGCTTATTTAGACAAACAAGGGCGACATGTTGCTagatttcaaaataatctcccagGCCCCGATTGGGCATATTCTATATTAAAAAGGCACAAGGACGAATATTCAACAAGAGTCGCCGCAAATATAAAAAGAGCGAGGGCAGGTGTTTCAAGGGAAGCTTTGAATGTATTTTTTGACAATTTAGAGCCACTTATCAAAGATCTTCCGGCatccaatatttttaattacgacGAATCCAATTTGAGCGACGATCCAGGAAAACAGCAAGGTATCTTCCGGCGGGGTGTTAAATATCCTGAGCGAGTGACAAATTTTTCCAAAAGTGCTACGTCCATTATGATTTGCGGATCCGCAGATGGTGTGATGTTGCCACCATATGTTATTTATAAGAGCCAACACCTTTATGATACATGGAAAGAAGGAGCGCCATCTGGACCGCCTTGCTGTAATAAACGTTGTTGTGCGGGAGGAACAAGATTTAATAGAACCAGCAGTGGGTGGTTTGACTCTGAGACATTTCGAGATTGGTTTATTCAATGCTTTCTGCCTCATGCTAAAAATTTACCAGGGCGCAAGGTAATGATTGGCGACAATTTATCGTCCCATTTAGACACAGATGTTATTGGACTTTGTGCGGAAAATGAAATTGATTTCGTCTGCTTGGTGCCGCATTCCACCCACTTATGTCAACCATTAGACGTAGCATTCTTCCGCCCAATGAAGGCTGCCTGGCGTGCAATCCTGTCAGAGTGGAAAGCTCAAAATATGCGAATCACAAGTGTCCCTAAAGACACTTTCCCCCGTCTGCTAACTAAGGCTCTGCATAAAATGGACTCGGCACAAGCAAAGCCTAATACACCATTTTGCACTGAGTCTTCAGGAATAAAACGTAATCTGAAAAGTGGTTTCAAGGCCACAGGAATTTTTCCATTTAACAAAGAGCATGTCTTGAAACGATTGCCAGATAACAATGCACTTGAAAACTCAGATGCGCCGGTAGAGTCTGTTTTAACTGATTATTTACGCACACAAAGATTTGGTGACTCTTCTTCATCAACTGTACGCAGAAGAACGCGCTTAAACTTAGCTCCAGGTGCTAGCGCTTCTACAATAATTCCTATACCCGGCCCTTCGTCTCCTGAAACAAATGAAGAATTACCTGGCCCTTCGTCTTCTGAAGCAAATGAAGAATTGCCCGGCCCTTCGTCTACATCGGCTGATTTAGATACAAAGGAAAATGAAATATGTGTTGGCAGATACGTGCTTGTAAAATTTTTTACTCCTAGAgggaaaaaaacatttaaatatgttTGTCGGATTATTGATACATCGCCACACATTGTAGTAATGGGATATAAgtcattagaaaataaaaaggtCTTTGAATTAGTTAGGAGTGACATTTCTGATATCGAAAAATGTGATATAATTTCATTTCTTCCAGAACCAAAGTCTTTAGTGAAGGAAGAGCCAACCTCAAAAGTAGAATTCCCGTTTGATGTAGACATTCTTGAGTTTAAGTGA
- Protein Sequence
- MPRDYKKKPGTRRYINYSDDLLNEALSKVVTGAISLRAASREYDIPFGTLYNKYKGNFTRTPGAQPIFSNTEEKSLLKAAAKCSDWGYPLTALDLRFLAKAYLDKQGRHVARFQNNLPGPDWAYSILKRHKDEYSTRVAANIKRARAGVSREALNVFFDNLEPLIKDLPASNIFNYDESNLSDDPGKQQGIFRRGVKYPERVTNFSKSATSIMICGSADGVMLPPYVIYKSQHLYDTWKEGAPSGPPCCNKRCCAGGTRFNRTSSGWFDSETFRDWFIQCFLPHAKNLPGRKVMIGDNLSSHLDTDVIGLCAENEIDFVCLVPHSTHLCQPLDVAFFRPMKAAWRAILSEWKAQNMRITSVPKDTFPRLLTKALHKMDSAQAKPNTPFCTESSGIKRNLKSGFKATGIFPFNKEHVLKRLPDNNALENSDAPVESVLTDYLRTQRFGDSSSSTVRRRTRLNLAPGASASTIIPIPGPSSPETNEELPGPSSSEANEELPGPSSTSADLDTKENEICVGRYVLVKFFTPRGKKTFKYVCRIIDTSPHIVVMGYKSLENKKVFELVRSDISDIEKCDIISFLPEPKSLVKEEPTSKVEFPFDVDILEFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00011876; iTF_00011878; iTF_01029154; iTF_01029155; iTF_00850565; iTF_00850570; iTF_00850571; iTF_00726222; iTF_00635319; iTF_01029152;
- 90% Identity
- iTF_00011876; iTF_00011878; iTF_01029154; iTF_01029155; iTF_00850565; iTF_00850570; iTF_00850571; iTF_00726222; iTF_00635319; iTF_01029152;
- 80% Identity
- -