Aeri013161.1
Basic Information
- Insect
- Acraspis erinacei
- Gene Symbol
- -
- Assembly
- GCA_035041075.1
- Location
- JAWWLR010000034.1:53049154-53065225[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.016 6.3 9.8 1.1 1 21 84 104 84 105 0.95 2 13 0.00012 0.046 16.6 3.8 2 23 114 136 113 137 0.95 3 13 0.06 24 8.0 4.5 1 23 144 167 144 167 0.95 4 13 0.042 17 8.5 1.1 1 21 184 204 184 205 0.97 5 13 3e-05 0.012 18.4 8.0 1 23 213 236 213 236 0.96 6 13 0.00021 0.082 15.8 4.4 1 23 248 271 248 271 0.98 7 13 1.9e-05 0.0074 19.1 0.1 1 23 278 301 278 301 0.94 8 13 0.00065 0.26 14.2 1.6 1 21 356 376 356 377 0.97 9 13 0.0051 2 11.4 8.5 1 23 385 408 385 408 0.92 10 13 0.0005 0.2 14.6 0.9 1 23 429 452 429 452 0.98 11 13 1.2 4.8e+02 3.9 0.5 1 15 459 473 459 473 0.90 12 13 0.69 2.7e+02 4.7 2.2 1 19 629 647 629 649 0.85 13 13 0.0013 0.5 13.3 5.2 1 20 658 677 658 678 0.96
Sequence Information
- Coding Sequence
- ATGTTAGCGCATGTTGATTCCTGGTTAAGTTTGACTACCCCGATAGGTGGAAGAGAAGCATCCAGAGCTTTGCCAACCGAAGGTCCAAGTCTGTCGATATTAGAGATGCACGCCTTTTCGAGGGCACCTCTAAGATCGCTGCAATATGGCAAAAGGAAATTAGACACTGATAATGTGGCTGTCAACGAAAAACTGCCAACCGATGATAGAGATCAAATTAAGGAATCAGAACAGAAGCCGAAAAACAAGTACAAATGCGCAAATTGTCCCCGTAGCTATAAATGGCAAAGTCATTTAGATTATCATCTAAAAAGTGAATGCGGGTTCAGAATACAGCTTAAATGTCAATTCTGCAGCAAACAATTTTCACAGAAAAGTAGCCTAAAGATCCATGAAAATCGCGTGCATCACAAGATAGCGCAAACGAAGCACAATTGCGACAAATGTTCTCGAAGTTATTCTTGGGCTCACGCGTTAAATCGACATAAACGTTTAAAACATTCAGCAGTCAAACCGGTAGTGCATCGGGACGCGAATCGGGAAAGGAAGTACAAATGCGAAAGGTGTGCTCGGACCTATTTAGAGAAACATAATTTGACTGTTCATCAAAGATTAGCATGCGGCGTTATGCCACAGTTTAAATGTCACCTGTGCGACAGGCGATTTAAGCAGAATTCGCACCTGAAATCCCATGTAAATCACGTGCATAATAAGATAGACTCAAAAAAGTCAGTAACCAATTATAAATGTGACAAATGTTCGCGAAGTTATCGCTCCATGAGTGGTTTTCGTCAACATAAACGCACAAAGCATGAGGCAGTTGAACCACAATTCATTTGCGACATTTGTGGCTATGCAGCGATTCGGAAATCAAACTTGACAAAACATATTATTCAAAAGCATCTAAAAAacCAAGAGGCTACAGGTCAAAAACATAATAAAGAATATGGGCCAAAATGGTTTACCCTATATATAAAGGAAACTGATAACTTATCTGTTAGCAACAAACTACCGGCTCCTAAGGAACATACAATTCAGGAATCAGAACAAGAAACGGAACAGAAATACAAATGCGAAAAGTGTGCACTCAGCTATACATTGAAATCAAATTTGTACCGTCATCAAAAATTCGAATGCGACGTCATTCCACAGTTTAGATGTAAATTCTGTGACAAACGATTTAAACAGAAATGTCACATGACTACCCATGTAGATCAGGTGCATCAGAAAACCCATGTTGATCAGGTGCATCAGAAAACAAGTCCAAAGAAATCGGTATTGAGTTATAAATGCGATATATGTTCTCGTAGTTACTCTTGGTTAGTTTCCTTAACTCGTCATAAACGTTCAGAACATGCAGCAGTAAAACCACAATTTATTTGCGATTTGTGCGGATATAAATCGAATAGGAAAGATCACGAGAATTCCGAGAGTGAGCTAAAGAATCCAACGAGAAGACTAGATGGTGGGTCATATTCTTGCGCATCTGCTCAGAGTCTTTATTGCTATAATTCGGATACCAGGATGTTATCTGAATTTGAAGTTGATGAGACTttggaaatcaaggaagaaaTTATACAAGataaaCATGATTCCAATATTGGGTCGAAGAAATTAACAGCAAAACTAGTTGGTGAGCCATATTTTGAGGCAACCACTCAAGTTTCTTTAGACAATAAGTCTGATGCCACGACTTTAATTAAATGCGACATTGAAGAAACTTTGGAAATTAAGGAAGAAATGATGCAAGatGAAGAAGCAATTACAGAGAAGAGATGTAAGAACAAATATAAGTCTATGTTGTATGCTGGTGTTTTTCCTATTAAGAGAAAACTGCAAACTCGAAAGAAGCAGGAAATTCAGGAATCTAAACCGGAAAAGAACTACAGATGCGAAAAGTGTGCCCGAAGCTATAGACAGAAATGCATTTTGGATCGTCATAACAAATTCGAATGTGGCGTTATGCCGCAGTTCAGATGTGAATTCTGCGACAAACGATTTAAACAGAAATGTCACATGAATAGCCATATAGATTGA
- Protein Sequence
- MLAHVDSWLSLTTPIGGREASRALPTEGPSLSILEMHAFSRAPLRSLQYGKRKLDTDNVAVNEKLPTDDRDQIKESEQKPKNKYKCANCPRSYKWQSHLDYHLKSECGFRIQLKCQFCSKQFSQKSSLKIHENRVHHKIAQTKHNCDKCSRSYSWAHALNRHKRLKHSAVKPVVHRDANRERKYKCERCARTYLEKHNLTVHQRLACGVMPQFKCHLCDRRFKQNSHLKSHVNHVHNKIDSKKSVTNYKCDKCSRSYRSMSGFRQHKRTKHEAVEPQFICDICGYAAIRKSNLTKHIIQKHLKNQEATGQKHNKEYGPKWFTLYIKETDNLSVSNKLPAPKEHTIQESEQETEQKYKCEKCALSYTLKSNLYRHQKFECDVIPQFRCKFCDKRFKQKCHMTTHVDQVHQKTHVDQVHQKTSPKKSVLSYKCDICSRSYSWLVSLTRHKRSEHAAVKPQFICDLCGYKSNRKDHENSESELKNPTRRLDGGSYSCASAQSLYCYNSDTRMLSEFEVDETLEIKEEIIQDKHDSNIGSKKLTAKLVGEPYFEATTQVSLDNKSDATTLIKCDIEETLEIKEEMMQDEEAITEKRCKNKYKSMLYAGVFPIKRKLQTRKKQEIQESKPEKNYRCEKCARSYRQKCILDRHNKFECGVMPQFRCEFCDKRFKQKCHMNSHID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -