Aeri006782.1
Basic Information
- Insect
- Acraspis erinacei
- Gene Symbol
- Prdm15
- Assembly
- GCA_035041075.1
- Location
- JAWWLR010000004.1:19898744-19924540[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.1e-05 0.016 18.0 6.1 1 23 579 601 579 601 0.98 2 18 0.0016 0.64 13.0 4.0 1 23 615 637 615 637 0.97 3 18 0.0047 1.9 11.5 1.3 1 23 643 665 643 665 0.97 4 18 4.5e-05 0.018 17.8 1.8 1 23 672 694 672 694 0.97 5 18 4e-07 0.00016 24.3 1.0 1 23 700 722 700 722 0.98 6 18 0.00028 0.11 15.4 2.8 1 23 728 750 728 750 0.97 7 18 7.1e-05 0.028 17.2 4.4 1 23 756 778 756 778 0.97 8 18 0.035 14 8.8 1.4 1 20 784 803 784 806 0.85 9 18 0.014 5.5 10.0 3.6 1 23 813 835 813 835 0.97 10 18 6.1e-07 0.00024 23.7 1.2 1 23 841 863 841 863 0.99 11 18 4.1e-05 0.016 18.0 6.8 1 23 869 891 869 891 0.95 12 18 0.00012 0.048 16.5 6.0 1 23 897 919 897 919 0.95 13 18 6.8e-05 0.027 17.3 5.7 1 23 1066 1088 1066 1088 0.96 14 18 1.2e-05 0.0048 19.7 0.3 1 23 1095 1117 1095 1117 0.98 15 18 2.1e-05 0.0084 18.9 2.7 2 23 1124 1145 1124 1145 0.96 16 18 0.00089 0.35 13.8 0.4 1 23 1150 1172 1150 1172 0.98 17 18 0.12 47 7.1 4.7 1 21 1182 1202 1182 1204 0.93 18 18 0.00042 0.17 14.8 4.0 2 23 1211 1232 1210 1232 0.97
Sequence Information
- Coding Sequence
- ATGTACCGGTCGATGGAAAACGAAACTCAGAGGTCGTACATCAACAGTCTAATCAACATCATTCCAGTGCAGAGACGGTACGGAACAACCGAAGAATCCAGTCGACGACGTGTTACCGCATTTTACCGTCTTCTTAATGAAGAGGGCAGATCGGTGAGCGTTTGTCGCGGAACGTTTATGAACACTTTCGCACTCACAAAAAAAACCATTGAGGTAATCCTCCAGAAGAAACAAAGAGGAGATCACAGTCTGATGGAACGTCGGGCTGGAAAACATCATCTCAAATATACTGAAAAGCACCGCCAAAGCGTCAAGGATCACATCAATTCCATTCCCAGACAGAAGAGCCACTACAGacgcaaaatttcagaaaaagagtaTCTCAGCAGCGATCTCAGTTATTCGAAGCTCCATAAAGCTTATTTGGAGAAAAACCCTGATCTTGCTGTCACAATCGAGTATTACAAAGAGGTGTTCAAACAAGATTTCTCGAAGCTTCGTTTTCGTGGTCTTGGTGTGGATTCATGCAGAACTTGCGATCCTTTGAGCTGTCATATGAATTCAACAACAGATCAGGTCAATATGAAGATGGAGAAAGCAGAAAATGCAAGATCGCAGATGACAATCGATCATCTCTCTTCTCCAAATTCGGCCTGTATGTCTAATATGTCAAGGGGCTTGCAAGAACTCACAAATTCCCCAATTATAACGAAGACAATCTACAATACAGATACGGCGAGAAAATTAAAGTCACAGAGAAGAAGTGCTTTAAGAAAAGCGTGGATTGATAAACTGCGTGAAGATCCTGTACAGCATGCAATTTACCTTGCTAAAGCACGAGAAAAGTATCATAAAAGAAGAAAAGAGGGAAAAGTGATATTTATTCGAGATTTGGGAAAGAAAGAGCGAGAAGAGCTAAGAAGAAAGAATAAAGAAGCCTCTAAAAGATATCGTGAAAAGAAGAAGATTTCTACGGCAGACAAAGAACAAGAAATATATGACAAAATAAGAAAAGAGAAAAGGGTGTTGACTGAATTGGTGAAGATTGAAAGAACAAGAAAAGAAGAAGAACAAGATGAAGATGATGAAGATGAAGATGATGATGAAGATCAAGATGATGAAGAAAAGGTATTACTGATGCAAGAtttagaaaaggaaaaagaagaagaTGAAAATGTACTATTAATGCAAGATTTAGAAtacaaaaaacaggaaaaaaatgaaaGGGTACTAGTTAAGCAAGATTTAGAGAAGAAAAAACAAGAAGAGGAATGTGAAAGGAGAAGTTTAGTTGAGGTGAAAGAAAGGCAGGTGCAGCTGAGAAGAAATGCTTTAAAAAgagaacaaattgaaaaattgcgaGAAGATCCTGTGCAATGTGCAATCTATCTTGCTAAAGAACGAGAAAGATATCAAAGGGAGAGAAAAGAGGAAAGGGTGTTACTTATTCAAGATTTAACAAAGGAAGAACGAGAAGCGCGAAGAAAGCAGAATAAAGAAGCTGCTAGGAGATATCGTGCTAAAAAGACCATTTCTTCTTCAGATAACATTCCGGCTGATATTTTACCAAAAGAGGAAGAACACTCATGGAACAGTGTCTTCATCAAATCTGAGCCACTCGAATACGACTCAGATGAAGAAAAAAGGGACAATCTATCTAACACAGTCGAAAGCGCTTCGATCAAGACTCACGCCCACACTTCCAAATTAcctaaaaaaagtattcaaaaaccCCACTATTGTCATGAATGCCAACGAGAATATAAAACCGCCCGAAGCCTGAGAAGGCACATGAATACTCACGCTCTCGTGAAAGGCCCTAAAGCTCAGCCAAAGAAGAAACATGTATGTGCAATTTGCAACAAAGGTTGTGCATCGCCAAGCAAACTTCAGTCCCACTATCACACGCACTTAGAAGTTGCGCCTTTTGAGTGTGACATTTGTCAAAGCAGATTCAGAAGCTACTATACCATGAAATATCACATAATGGCTCATATGCAAGTCGGCGGACGTCACAAGTGTCCAATTTGTGCAAAAAGTTATGTGAGATCCAGCCGATTGAGGGACCACATGTATTCCCACTCGCAAATCAAACCCTTTGAGTGTGAAGTTTGCAAGAAAAGTTATTCGAGGAAGAATGATCTGAAGGTTCACATGATTACCCACGACGAGAGAAGAACTTTTCATTGTGCAATCTGCTCGAAAGGTTTTACGAACTTGTCTTATCTAAAAATGCATACAAAGCTTCACTCGGATGATTGGTCGCACGTGTGTAACGTTTGTggcaaaagatttcataagataaGTTATCTTAAGATTCATATGAATCGGCACACGGGAGTGAAACCGTTCGAGTGCGATATTTGCAAGAAGAAGTTCCCGAGTCGAGCTTCAATGAAATGTCATGTAGTTGCTCATATGGAAGAAGGAAAGTCCCACAAGTGTCCTGTCTGCAAAAACTGTTATCAAAAAGCATCGATGCTGAAGGAACATGCACGTCTCCACACGGGTGCTAAACCCTACAAATGCAAAGTTTGCGAGAAGAGTTTTATGAGAAAAGGTGGTTTAACGCAACATATGCTGACTCACGATAAAAAAAGGCCGTTTCTTTGCGACATTTGCCATAAAAGTTTCAAGACGCATGGTCATCTCAAAATTCATCAAAAGATACATTTGAATATGGATTCGTTTCTTTGTGAGATTTGTCATAAGAGTTTCAAGAGGTATGGTCATCTCACGCTTCATAAAAAGATGCATTCGAAGGATAATGATTCTCGGGGGGCAAAGGCCATTGAAGCAAGTTCAATAGATGAAACTGTTATTTTCGTGAAATCTGAAATACAAGAAGATGAGGAAGAAGAAGATGTAAATTTTCAGGGCCAAGATATGAGTCCTGAAAAGATGATTCCAGAAGAAAAGAAAACCGACAGTATTGTGAAGACTGAAGTTAAGAGAGAAATATGTGATGAAGATACACATTTGATCACGAGTGAAACTAAAAATGCTACTTTACTTTCGtttgtatCAGTAGAAATGGAAGCTGTCTTTATCAAATATGAACCTACAGAATACGAATCAGTGGACGAGGAGAATTTCTTCAACAAAGAGAGCAAtgatcttcaaaaaaatgaagcAGCTTATTTATCACCAAGAAAACTTGACACTCACGTTAATGTACACTTAAATACCGAGCCTTTCGAGTGtgacatttgtaaaaaaacattcaaaaatcgcCATAATGTAAGAAAACATATACATGATCATATAGAAAGTGGAGGATCTCACAAGTGTCCAGTTTGTGCCGAAAGTTTCGAGAATCCCCTCAATTTAAGAATACACATGCGCCTTCATTTGGAAAATTACGACAACGAGTGTGTCGTTTGCCATAAAAGATTTTCAACCACAAGTAATTTAGTGCGACACATGTTCAGCCACGGCGAAAAATCTTTCCAGTGTGACATTTGTTTCAAAGGTTTTTTGAAACCGGATGCTCTGACAAATCATAAAAGGATCCACTTAGGCGAAGAGGAACGTAAGCTGCTCTATAAGTGTAAATTGTGTGATAAGGGTTTCATTAAGAAATATAAGCGTGATCAACACATGCTTTGTCACAGTAGAGAAAAACCGGTCGAGtgcgaaatttgtaaaaaaatattcaaatacagAACGTGTTTGACAAAGCACAAACGACTTCATCCGGGACAGAAAGAGACACAAAGTGAAGACAATCATTCTGATCAAATTTCAAGGGATGAAAAAGGAAAAGTGGATTTTGTTCTGATTGGAATTAAGGGTGAAGTAGAAGATGAAGATAGATATTTAGATTGCCGAAAGGAAAACGTAATGAGTTCAAGTGAAAACTCGAAGttattttctgtagaaaagaAACCTTGTGATATATTAAGTTTCAATTCTGAAATTGAATTTCAAGATGTGAAGATCGAAAAATAA
- Protein Sequence
- MYRSMENETQRSYINSLINIIPVQRRYGTTEESSRRRVTAFYRLLNEEGRSVSVCRGTFMNTFALTKKTIEVILQKKQRGDHSLMERRAGKHHLKYTEKHRQSVKDHINSIPRQKSHYRRKISEKEYLSSDLSYSKLHKAYLEKNPDLAVTIEYYKEVFKQDFSKLRFRGLGVDSCRTCDPLSCHMNSTTDQVNMKMEKAENARSQMTIDHLSSPNSACMSNMSRGLQELTNSPIITKTIYNTDTARKLKSQRRSALRKAWIDKLREDPVQHAIYLAKAREKYHKRRKEGKVIFIRDLGKKEREELRRKNKEASKRYREKKKISTADKEQEIYDKIRKEKRVLTELVKIERTRKEEEQDEDDEDEDDDEDQDDEEKVLLMQDLEKEKEEDENVLLMQDLEYKKQEKNERVLVKQDLEKKKQEEECERRSLVEVKERQVQLRRNALKREQIEKLREDPVQCAIYLAKERERYQRERKEERVLLIQDLTKEEREARRKQNKEAARRYRAKKTISSSDNIPADILPKEEEHSWNSVFIKSEPLEYDSDEEKRDNLSNTVESASIKTHAHTSKLPKKSIQKPHYCHECQREYKTARSLRRHMNTHALVKGPKAQPKKKHVCAICNKGCASPSKLQSHYHTHLEVAPFECDICQSRFRSYYTMKYHIMAHMQVGGRHKCPICAKSYVRSSRLRDHMYSHSQIKPFECEVCKKSYSRKNDLKVHMITHDERRTFHCAICSKGFTNLSYLKMHTKLHSDDWSHVCNVCGKRFHKISYLKIHMNRHTGVKPFECDICKKKFPSRASMKCHVVAHMEEGKSHKCPVCKNCYQKASMLKEHARLHTGAKPYKCKVCEKSFMRKGGLTQHMLTHDKKRPFLCDICHKSFKTHGHLKIHQKIHLNMDSFLCEICHKSFKRYGHLTLHKKMHSKDNDSRGAKAIEASSIDETVIFVKSEIQEDEEEEDVNFQGQDMSPEKMIPEEKKTDSIVKTEVKREICDEDTHLITSETKNATLLSFVSVEMEAVFIKYEPTEYESVDEENFFNKESNDLQKNEAAYLSPRKLDTHVNVHLNTEPFECDICKKTFKNRHNVRKHIHDHIESGGSHKCPVCAESFENPLNLRIHMRLHLENYDNECVVCHKRFSTTSNLVRHMFSHGEKSFQCDICFKGFLKPDALTNHKRIHLGEEERKLLYKCKLCDKGFIKKYKRDQHMLCHSREKPVECEICKKIFKYRTCLTKHKRLHPGQKETQSEDNHSDQISRDEKGKVDFVLIGIKGEVEDEDRYLDCRKENVMSSSENSKLFSVEKKPCDILSFNSEIEFQDVKIEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -