Aeri006745.1
Basic Information
- Insect
- Acraspis erinacei
- Gene Symbol
- -
- Assembly
- GCA_035041075.1
- Location
- JAWWLR010000004.1:18877790-18880090[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00011 0.043 16.6 2.1 1 23 9 32 9 32 0.94 2 18 0.00073 0.29 14.0 3.9 1 23 38 61 38 61 0.96 3 18 2.8e-05 0.011 18.5 0.2 3 23 91 112 90 112 0.96 4 18 0.002 0.78 12.7 4.8 1 23 118 141 118 141 0.98 5 18 2.2e-05 0.0086 18.9 0.7 1 23 218 241 218 241 0.97 6 18 0.0036 1.4 11.9 2.3 1 23 247 270 247 270 0.96 7 18 0.032 13 8.9 1.9 3 23 310 331 309 331 0.95 8 18 0.00024 0.096 15.6 1.7 1 23 337 360 337 360 0.98 9 18 0.00037 0.15 15.0 4.1 2 23 420 442 419 442 0.89 10 18 0.00025 0.1 15.5 0.3 1 23 486 509 486 509 0.94 11 18 6e-06 0.0024 20.6 0.3 1 23 515 538 515 538 0.98 12 18 0.018 7 9.7 1.1 1 23 551 574 551 574 0.92 13 18 3.3e-06 0.0013 21.4 1.1 1 23 580 603 580 603 0.96 14 18 0.0003 0.12 15.3 4.4 3 23 610 631 609 631 0.96 15 18 9.9e-06 0.0039 19.9 3.9 1 23 636 658 636 658 0.98 16 18 0.0018 0.73 12.8 2.4 2 21 665 684 664 687 0.94 17 18 3.4e-05 0.014 18.2 0.5 1 23 693 715 693 715 0.97 18 18 8.9e-07 0.00035 23.2 1.4 1 23 721 744 721 744 0.97
Sequence Information
- Coding Sequence
- ATGGGCGTACTGATATCAAGCATGTACAAGTGTAAAGGTTgcggtaaattatttaaactcaaaGAAATGCTGAAGGCTCATTACATTCATTTACATACCGATATTTATCGATTTCCTTGTGAAGAATGTGGCGAGAAATTCAAGTTCTTTTACTATCTCAGTCAACACAGAAGGCTGTGTCATCCAGAAAGTAAATCGGCAGAAGCATCATCTTCTGGaacttccaaaaaagatttaccaACTCCGAAATCTCTTCCGAATGACCGGGCTTGTAAAATTTGTGATAAGGAATTCCCCAATCCTGGTGCTCTCAGAAACCATCATATTCGAATACACACAAAGGATTATAAATATCCCTGCAATATGTGTtcgaaaaagtttaaactttgcAAGGATTTCAACGATCACAGGAGGCGAGTTCATACAAACCAGATAGCGGAAACAAAAAATTCGAGTGAGGGTCCGGAAGCAAAAAATTCGAGTAATGGTCCGGAAGTGGATCCGCTCTCACTGAGTTTGGAAGGGGTTAATAGTGGATTTTCTATTAAAGTAGAACCACTAAGCATCAGCCAGAGCAGTGAAAAGCAAATAAAAAGTGAGAAATCCAACCGACTTTCGTTAGAAAATATGGGCGTGCAGATATCGACAATGTACAAGTGTAAAGGTTGCGGTACATTATTTACGCGCAAGGATGTATTGAAGGCCCATTACATTCGATTACACACAGATATTTATCGATTTTCTTGTGAAGAGTGTGGCGATAAATTCAAGTTCTTTTACGATCTCAATCAGCATAAAAGACAATCTCATGAAAAAGAGACGACAGAAGAAACTCTTTCATCTTCTGTACAAACATCAAGTGAAGGTTCCCTAATgcagaagaaaaaaagattaagattAAAAACTTCCGATCCGAATGACCGGATTTGTAAAGTTTGTAATAAGGAATTTCCCAGTTTTCATGCTCGAAAGAACCACTATATTCGAATGCACACAAATGATTTTAAGTATCCCTGTGGAATGTGTTCGAAAAAGTTTAAGCTGAGTAAAGATTTCAACGATCACAGAAGGCGCGTTCATCCAAAGGAAAAATCGACAGAAACTCCAGCAAGTTCGAGTAAAAGTGAAGAAGAATGTAGAGACATTAAAAAAGACGTTGTAGTAATTAAAGATGATTCGATAGAAATCGTAGAACATTCTATCGAAACTAAACATGATCTTAAGAAGAAGATGAAAGAGAAATTATTTCAGGACCTGACTTGTCACATTTGTGATAGGAAATTCAGCAGATTACATGCTCTGAAAAATCACAATGTTCGTTTTCACGTGACAGAAGCTCAACTGAACTCGGAAAAGGGGAAACCAAAGATTAAGGAAGAACAAGAGCATCTAGCAACTGAAGCTGCAACTTGTTCATCCACTGGAATTAAAGAAGCCGATCAGAGAAAAGAATTGTACATTTGTGAAGCCTGTGGTAGGGCATTTGTGCGCAAAGCGAGTTTGCAGATGCATTTCACTCGTACGCACACCCACGAGTATAATTATACTTGTGCCGAATGTGGAAAAGAATTTAGAATCAAGAAAGACCTGGCTTCGCACTTGAGGCGAATACATCAGCAAGGAATTGGAGGACGAGAGCGAACAGgcgaatttgtttgtaaaatttgcgGCATCAAAGTCTTGCGTAAAGGCACACTAACCATCCATCATCTTCGTAAGCACACtcatcagtttaaattttcctgcAAAGTCTGCGGAAAGAACTTCAAAGTCCAGGGAGATCTTACCACTCACACGAGGCTCCGTCACTTGGAACCGCCAGCAATTTGCGAGGTTTGCGGCAAGACTTGCAAGAACAAACATTCCCTCTATGTCCATCAGAAGTATACTCATTTCCAGACTAAATTCCGGTGTCCCTATTGCACGAGATGTTTTGCTTCTCAAGAAAATCTCGGCCATCATCTCATGTCCCATGAAAAGCGGGAGAGACTCACTTGTTCAGAATGTGAGCATACTTTTGCGAGTAAAACTACTCTGGTGAATCATATTCGATGTGTACATGCCGAGGAGAAGACGTTTGCATGTCAGGTTTGCGGAAAATTGTTCCCTTCGTATTCTCGGCTGCGGAAGCATCTCATCACGCATACGGGTAAACGgctttttgtttgtgaaatatgtGGGAAGCGATTTAAGCAGAAACCTAGCTTGATCAGTCACAGGAAAAAGAAGCATCCGGGCGAACATCCACCATTGCCTGTTATTCGATTGGATAATGTTCTTAGCGAATTTATCCAGAAATAA
- Protein Sequence
- MGVLISSMYKCKGCGKLFKLKEMLKAHYIHLHTDIYRFPCEECGEKFKFFYYLSQHRRLCHPESKSAEASSSGTSKKDLPTPKSLPNDRACKICDKEFPNPGALRNHHIRIHTKDYKYPCNMCSKKFKLCKDFNDHRRRVHTNQIAETKNSSEGPEAKNSSNGPEVDPLSLSLEGVNSGFSIKVEPLSISQSSEKQIKSEKSNRLSLENMGVQISTMYKCKGCGTLFTRKDVLKAHYIRLHTDIYRFSCEECGDKFKFFYDLNQHKRQSHEKETTEETLSSSVQTSSEGSLMQKKKRLRLKTSDPNDRICKVCNKEFPSFHARKNHYIRMHTNDFKYPCGMCSKKFKLSKDFNDHRRRVHPKEKSTETPASSSKSEEECRDIKKDVVVIKDDSIEIVEHSIETKHDLKKKMKEKLFQDLTCHICDRKFSRLHALKNHNVRFHVTEAQLNSEKGKPKIKEEQEHLATEAATCSSTGIKEADQRKELYICEACGRAFVRKASLQMHFTRTHTHEYNYTCAECGKEFRIKKDLASHLRRIHQQGIGGRERTGEFVCKICGIKVLRKGTLTIHHLRKHTHQFKFSCKVCGKNFKVQGDLTTHTRLRHLEPPAICEVCGKTCKNKHSLYVHQKYTHFQTKFRCPYCTRCFASQENLGHHLMSHEKRERLTCSECEHTFASKTTLVNHIRCVHAEEKTFACQVCGKLFPSYSRLRKHLITHTGKRLFVCEICGKRFKQKPSLISHRKKKHPGEHPPLPVIRLDNVLSEFIQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -