Aeri038824.1
Basic Information
- Insect
- Acraspis erinacei
- Gene Symbol
- Trl
- Assembly
- GCA_035041075.1
- Location
- JAWWLR010000155.1:64521164-64529968[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-06 0.0031 19.6 0.0 2 38 196 232 195 238 0.87 2 4 7.2e-11 2.1e-07 32.9 0.0 5 39 249 282 246 287 0.85 3 4 0.0012 3.7 9.8 0.0 6 34 302 329 299 335 0.86 4 4 2.2e-13 6.4e-10 41.0 0.1 5 42 361 398 360 400 0.95
Sequence Information
- Coding Sequence
- ATGTCTAAGATCAACAACAGTGAACCTGTTAATGAAAGCTACTCTTTCAAATGGGGCGATTACCAGAATCATTTATCTGGAGTTGTTCGCCAGCTCCTCGAAGAGGATTGTATGGTGGATGTTACATTGTCTGCAGCTGGGGAACGCATTCACGCTCATCGCATTGTTCTTTGCGCTTGCAGCACTTTATTCAAAgAACTTCTCAGTCATGTGACGGATGATCACCCAACAATCATTCTAAGCGGCGTATCTGCTGAAGATGTCAGAGCAATTGTTGAATTCACATATCAAGGAGAAGCTCATGTTCCTGAAGAAAATATAAGAAATCTTTTGGAAGCAgctcgttttctaaaaataactgGTTTGATGGAGTATGATGTTAACGAGTCAAGCGTAAAATCAAGAGATTCAAGTGAAGAAAACGGTGATTCTTTCACAGAATTAAATGAAATGGAAGAAGAAGTATTTGACGTTTTAGAACAACCTTACGATGACACGAACGAACAGTCGGAACAGAGTGCAACAGAGGAAAGTTCAGGAGTGAAAAAAAGAAAGCGGCGTTTTCCCACGAAAAGGGAATACAGCGAAGATATGCTAGCCGCCGCTATTAACAATTTACGTGAGGGACAGACTTTAATCGAAGCTTCCACCAAAAACAATATCCCTCGTTCCACTTTGTATATGCGAGCGAAAGCATTAGGCATTCAGTTGAATGCTTCTAGAAATGAATATCCTGCCGAGTGTATGAGGGCAGCTATAAATTCTGTCATtggTGGATCGAGTTTACAGCAAGCATCAGAAATGTTTGGTATTCCAAAAACTGTCCTCTGGCGACGTATGCAAAAAGAAGGCTACCATATTTTTCGTTCCGAAATGAAAAGAAGTTACGGCTCTGATAAAAGAGAAGCTGCCGTAGAAGCTTTGCAACGCGGAGAAAATCTCACGAAAGTTGCACAACAATATCAAATACCAAAGACAACTCTATTTAGAGACAAGGCTCGTCTAGTCGACGAAGGCAAATTGCCTACATCTTTctggaaaaaaaggaaaactgaaaacgaatcgattaaaaaattccgACTGGAAGAAGCCGTTGCTGCCTGTAAAAGTGGAAAAATGTCTCAAGCAGCGGCTTCCGTATTATATCATATTCCAAAAACTACGATATGGAGACGCTTGCAGcaacataattcaaaaattaaatcaaaaccaGATTCTGTTGATCCTCTTTCGAGTGTGCAAGATAATATCGAAAGCGATGCCCAATTTACATACTGCGAgGTCGCTTCCGAAATCCCAGTGACTTACACAATTCAAGATAATGGCATCTCCGGAGAGCAGCAAGTTATAGTTTTCACGCCGGAAGAGGTCGAAGAACTCAATTTGGACGCTCGTACACAAATCATTATAAGTTCGgaTTCAAATCAGGAATTGTGCACCAACTCCTCGGCCGTCGAAGATGACACTAATTATAGTTCGAATAAAAGTTAA
- Protein Sequence
- MSKINNSEPVNESYSFKWGDYQNHLSGVVRQLLEEDCMVDVTLSAAGERIHAHRIVLCACSTLFKELLSHVTDDHPTIILSGVSAEDVRAIVEFTYQGEAHVPEENIRNLLEAARFLKITGLMEYDVNESSVKSRDSSEENGDSFTELNEMEEEVFDVLEQPYDDTNEQSEQSATEESSGVKKRKRRFPTKREYSEDMLAAAINNLREGQTLIEASTKNNIPRSTLYMRAKALGIQLNASRNEYPAECMRAAINSVIGGSSLQQASEMFGIPKTVLWRRMQKEGYHIFRSEMKRSYGSDKREAAVEALQRGENLTKVAQQYQIPKTTLFRDKARLVDEGKLPTSFWKKRKTENESIKKFRLEEAVAACKSGKMSQAAASVLYHIPKTTIWRRLQQHNSKIKSKPDSVDPLSSVQDNIESDAQFTYCEVASEIPVTYTIQDNGISGEQQVIVFTPEEVEELNLDARTQIIISSDSNQELCTNSSAVEDDTNYSSNKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392906;
- 90% Identity
- iTF_00200916;
- 80% Identity
- iTF_00011293;