Alat001261.1
Basic Information
- Insect
- Acleris laterana
- Gene Symbol
- -
- Assembly
- GCA_963966035.1
- Location
- CAWYPN010000354.1:9244-22915[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.04 4 9.2 4.0 1 23 139 161 139 162 0.95 2 19 0.35 35 6.2 3.1 1 23 169 191 169 191 0.97 3 19 0.59 59 5.5 3.7 1 23 195 217 195 217 0.93 4 19 0.00033 0.033 15.8 1.7 1 23 222 245 222 245 0.97 5 19 5.8 5.8e+02 2.4 0.0 3 23 252 273 251 273 0.76 6 19 0.014 1.4 10.6 0.6 3 19 288 304 287 306 0.95 7 19 0.001 0.1 14.2 0.2 2 23 317 339 316 339 0.94 8 19 0.021 2.1 10.1 0.1 2 23 345 367 344 367 0.94 9 19 0.94 95 4.9 0.5 1 15 390 404 390 407 0.82 10 19 2.8 2.8e+02 3.4 1.3 1 11 425 435 425 439 0.81 11 19 1.8 1.8e+02 4.0 0.9 1 13 501 513 501 516 0.81 12 19 1.8 1.8e+02 4.0 0.9 1 13 542 554 542 557 0.81 13 19 1.8 1.8e+02 4.0 0.9 1 13 577 589 577 592 0.81 14 19 2 2e+02 3.8 0.4 1 15 647 661 647 662 0.87 15 19 1.2 1.2e+02 4.6 0.2 1 14 717 730 717 732 0.83 16 19 3e-05 0.003 19.0 2.7 1 23 788 810 788 810 0.96 17 19 0.00098 0.098 14.3 1.6 2 23 817 838 816 838 0.96 18 19 2.4e-06 0.00024 22.5 1.6 1 23 844 866 844 866 0.97 19 19 2.8e-05 0.0028 19.1 1.3 1 23 872 895 872 895 0.96
Sequence Information
- Coding Sequence
- atgcgaacactgctgtttggcgCCGAGGACGTGGCCGAAGCCTGTGACAGCGACCACCTCAGCCTCAAGTACGAGGACGACTCGAACGACGACATGACGCTGAGCGAGCTGCGCGGCGAGAAGGCCGCGCAGGGGGAGCCGGCGGGGCGGGGGGAGGGGGAGGGGGGGCAGCAGGCCGCGCGCGAGGGGGCCGCGCCCAAGCCGGCCAGCAGGAAGAAGAAGGTCCTTCGGAAAACAAAGgtaaaaaaagtaaaaacagaaacgATAGAACGCagaaaaaacatgaaaattcgCGACGAGGACTTCCCCGCTTTCGAGAAGGAGTACAACTTCGACGTGGTGATCCTGACGCGGGAGCAGCAGGCGGCGGACATGGCGGCGCGGCGCGAGCGGGACAACTTCAGGAACTCCACGTTCAAGTGCGAGCGGTGCTTCAGAGGGTTCTACTCCGAGGAGACGCTGCGGAACCACAATGAGAAGCACCATGACGAGAGCATCGGCCCGCACGAGTGCACCCTGTGCCGCTGCCGGTTCCGCATCCCGGGCATCCTGCGGCGCCACCTCGAGACGCACCGCCTGCGCTTCCTGTGCCAGCACTGCGGGTTCACCGCCAGGGATCGGTCGCACGCCATGACGCACTCCAAGGAGCACCGGGGACACCGGTACGAGTGCCAGTACTGCGGGAGCACCTTCAAGAAGCGGTCGACGTTCGGCACCCACGTCCGCATCCAGCACCCCAACGAGAACAAGGCGTGCGACGTGTGCGGCGAGGCGTTCCTCGGCGCGCTCGGGCTCGCGCTGCACAAGAAGAAGTCGCACCGGCAGGACTGTCAGCAGCCGGCGGAGGGCGGGTCCGCGTGCTGCAAGCAGTGCGGCGTGCAGTTCGCCAGCCAGTACGCACTCTCGCGGCACAGCGCGCACGCCGCGGATGGCTGCCAGAACATCTGCGCGTGCGCGCTGTGCGGCGCGAGCTTCAAGGACGACAAGGGGCTGCAGGACCACATGCGAGAGGTGCACCGCTCGAGGGAGACGCAGTGCCAGGAGTGTGATATGACGTTCGTGACGGAGGCGTCCCGCGCCGTGCACTACGAGCGAGTGCATCTCAAGGTCAAGATCACGCGGCGGCTGCCCAAGTCGGGCCGCAAGTACGACCGCTACGGGGACAACTTCATGTGCGACATGTGCGGGAAGAAGTGCCAGGTGAGCTCCCAGGTCAATGTCAAGGTCAAGGTGAAGGTCACGAGCCGCAAGTACGCCCGCTACGGGGACAAGTTCATGTGCGACATGTGCGGGAAGAAGTGCCAGGTGAGCTCCCAGGACGAtgtcaaggtcaaggtcaagaTCACGCGGCGGCTGCCCAAGTCGAGCCGCAAGTACGACCGCTACGGGGACAACTTCATGTGCGACATGTGCGGGAAGAAGTGCCAGGTGAGCTGCCAGGTCGATGTCAAGGTGAAGGTGAAGGTCACGAGCCGCAAGTACGCCCGCTACGGGAACAACTTCATGTGTGACATGTGCGGGAAGAAGTGCCAGGTGAGCTCCCAGGTCGAtgtcaaggtcaaggtcaagaTCACGCGGCGGCTGCCCAAGTCGAGCCGCAAGTACGACCGCTACGGGGACAACTTCATGTGCGACATGTGCGGGAAGAAGTGCCAGGTGAGCTCCCAGGTTGATGTCAAGGTCAAGGTGAAGGTCACGAGCCGCAAGTACGACTGCTACGGGGACAACTTCATGTGCGACATGTGCGGGAAGAAGTGCCAGGTGAGCTCCCAGGTCGATGTCAAGGTCAAGGTGAAGGTCACTAGCCGCAAGTACGCCCGCTACGGGGACAACTTCATGTGCGACATGTGCGGCATGAAGTGCCAGGTGAGCTGCCAGGTCGATGTCAAGGTCAAGGTGAAGGTCACGAGCCGCAAGTACGCCCGCTACGGGGACAACTTCATGTGCGACATGTGCGGCATGAAGTGCCGGGTGAGCTCCCAGGTCGATGTCAAGGTCAAGGTGAAGGTCACGAGCCGCAAGTACGCCCGCTACGGGGACAACTTCATGGACGACATGTGCGGCATGAAGTGCCAGGTGAGCTCCCAGTTCGATGTCAAGGTCAAGGTGAAGGTCACGAGCCGCAAGTACGCCCGCTACGGGGACAACTTCATGTGCGGCATGTGCGGGAAGAAGTACCAGGTGAGCTCCCAGGTCGATGTCAAGGTCAAGGTGAAGGTCACGAGACGCAAGTACGACCGCTACGGGGACAAATTCATGTGCAGCAAGTGCCAGGTGAGCTGCCAGGTCGATATCAAGGTCAAGGTGAAGAACAACATCGCGCTGAAGTACCACATCCGGTCGCACACGGGCGAGAAGCCGCACGCTTGCCCGCACTGCCCCAAGCACTACTCCACGCCCGTCGGGCTGCAGTACCACATCCGGTCGCACACGGGCGACAAGCCGCTGGTCTGCCCGCACTGCCCGCTGCGGTACGCCACGCACAAGGGACTGCAGACGCACCTGTTGAAGCACACGGGCGAGCGGCCCTTCAAGTGCGACCTGTGCGGGAAGGCGTTCACGCAGAAGACGATGCTGAACAAACACAAGACCGTTCACACGGGAGAGAAACCTTTCTCTTGCGAAATCTGTGGCAAAACGTTCACGCAGTCGGGCTCCGTGCACACCCACGTGAAGTACGTGCACAAGAAGCTCCCGGCGCCGCCCCGCAACCGCGGCGCGCGGCTCAAGGCCGAGTga
- Protein Sequence
- MRTLLFGAEDVAEACDSDHLSLKYEDDSNDDMTLSELRGEKAAQGEPAGRGEGEGGQQAAREGAAPKPASRKKKVLRKTKVKKVKTETIERRKNMKIRDEDFPAFEKEYNFDVVILTREQQAADMAARRERDNFRNSTFKCERCFRGFYSEETLRNHNEKHHDESIGPHECTLCRCRFRIPGILRRHLETHRLRFLCQHCGFTARDRSHAMTHSKEHRGHRYECQYCGSTFKKRSTFGTHVRIQHPNENKACDVCGEAFLGALGLALHKKKSHRQDCQQPAEGGSACCKQCGVQFASQYALSRHSAHAADGCQNICACALCGASFKDDKGLQDHMREVHRSRETQCQECDMTFVTEASRAVHYERVHLKVKITRRLPKSGRKYDRYGDNFMCDMCGKKCQVSSQVNVKVKVKVTSRKYARYGDKFMCDMCGKKCQVSSQDDVKVKVKITRRLPKSSRKYDRYGDNFMCDMCGKKCQVSCQVDVKVKVKVTSRKYARYGNNFMCDMCGKKCQVSSQVDVKVKVKITRRLPKSSRKYDRYGDNFMCDMCGKKCQVSSQVDVKVKVKVTSRKYDCYGDNFMCDMCGKKCQVSSQVDVKVKVKVTSRKYARYGDNFMCDMCGMKCQVSCQVDVKVKVKVTSRKYARYGDNFMCDMCGMKCRVSSQVDVKVKVKVTSRKYARYGDNFMDDMCGMKCQVSSQFDVKVKVKVTSRKYARYGDNFMCGMCGKKYQVSSQVDVKVKVKVTRRKYDRYGDKFMCSKCQVSCQVDIKVKVKNNIALKYHIRSHTGEKPHACPHCPKHYSTPVGLQYHIRSHTGDKPLVCPHCPLRYATHKGLQTHLLKHTGERPFKCDLCGKAFTQKTMLNKHKTVHTGEKPFSCEICGKTFTQSGSVHTHVKYVHKKLPAPPRNRGARLKAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -