Basic Information

Insect: Acleris laterana
Gene Symbol: RTase
Assembly: GCA_963966035.1
Location: OZ014467.1:8087853-8099800[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00012 0.012 17.1 1.7 1 23 126 148 126 148 0.99

2 9 0.032 3.2 9.5 3.3 2 21 155 174 154 176 0.94

3 9 0.00012 0.012 17.1 1.2 1 23 182 204 182 204 0.98

4 9 0.0016 0.16 13.6 3.4 1 23 210 232 210 232 0.93

5 9 1.7e-06 0.00017 22.9 2.4 1 23 238 260 238 260 0.96

6 9 0.028 2.8 9.7 1.6 5 23 270 288 268 288 0.95

7 9 4.3e-08 4.3e-06 28.0 0.8 1 23 293 315 293 315 0.98

8 9 0.0029 0.29 12.8 0.2 2 23 318 339 317 339 0.95

9 9 4e-05 0.004 18.6 0.4 1 20 345 364 345 366 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00012	0.012	17.1	1.7	1	23	126	148	126	148	0.99
2	9	0.032	3.2	9.5	3.3	2	21	155	174	154	176	0.94
3	9	0.00012	0.012	17.1	1.2	1	23	182	204	182	204	0.98
4	9	0.0016	0.16	13.6	3.4	1	23	210	232	210	232	0.93
5	9	1.7e-06	0.00017	22.9	2.4	1	23	238	260	238	260	0.96
6	9	0.028	2.8	9.7	1.6	5	23	270	288	268	288	0.95
7	9	4.3e-08	4.3e-06	28.0	0.8	1	23	293	315	293	315	0.98
8	9	0.0029	0.29	12.8	0.2	2	23	318	339	317	339	0.95
9	9	4e-05	0.004	18.6	0.4	1	20	345	364	345	366	0.94

Sequence Information

Coding Sequence: ATGTCTCTGGAAGACATGGCCACTAAACTAGAGACTCCTTGTGTCTATTCGAACGATGTAAATTTCTTAACCGAGTCAAAAGAGGACTCTTGCACCGAGTTTAATGAACCCGTAGATGAATTTAATGAAGACTGCTTAACATTCGAGGGGGGTTTGTTTGATAATAATGATCAGATTAATCCAGTTATGTCATTAGAGTTAGGATTTGAAAGTGTTTGTGGAATTCCTGGTAGTGTGGAGACACAGGATCTGTATTTGGACCATGAGGTGAAGGATGAGCTGGTGGTGGGCCCTGAGGTGTTGCAGAAAGCTGCGCCGAGCGCCATAGCTCAAGACAGCCACGAGGCTGACGAGGGGACGAAGCCAGTCAAACCTTTTCAATGCACCGTGTGCGAGGAGCGGTTCACCTTTGAAAACAACCTGCAGGTTCATTTCCGCCGCCACAATACCATGCGTGTGACCAAATGCGATGTCTGCCAGAAACGGTTCACGGGTGCCAAATCCTTCGAGATCCACCGGCGCTGCCACAACCGCGACAGACGCTACGCCTGCCACATGTGCGACAAAATCTTCACCTCAAAACAGATACTCGAGAATCACTTGCGAGTTCACTCGGGAGAAAAACCTTACACTTGCGAAGTGTGTAAGAAACAGTTCAAGCAAAGAGGACATCTTTATGAACACAGTACGTTACACACAGAGGTAATACAGTTTAAATGTGCTGAATGCGGAAAAGGGTTTCGAAGAAAAAGCAATTTGCACAGACACAACTTGATTCACGTAAAGTCGGAAAAGATGTTTACGTGTGAGTGTGGAAAACGATTTCATACACAAGCCAATTTAGACTCACATGCAAAACTACACAGTCAAAAGCCTTATCCTTGCGAGACTTGCGGCAAGCCCTTCCCATCAAAGTCGCAGTTGAGGAAACATCAGAAGACACATGAGTTGTCTTGTAAAGTTTGTGGCCAGTTGTTTAAAATGCGGTCGGATCTGATTGAGCATAAGGCGGTGCACAAAGATGAGCGAATATTTCCCTGCGAGATGTGTGGAAAGAAGTTCAAAAGGCGATTTGCGCTGAAGACTCATGTTCTTTTGAAGTCCTGTGTGAAGAAAGATGGATATATTTTTAAGCATAAGTCGCGGACGGGTGACGGCCGCGGGGGGGGCGTTGGCTTCTACGTGCGGCGCGAGCTGCGCGCGCGCGTGCGCGGGCACCCGCCGGCTGCGCTGGAGCAGCTGTGGCTGGAGGTGAGCCTGCCCGGCGGCCGCCGCATCGCAGTCGGCACGGCTTATCGTCCCGTGGCCGTTCCCGTGCCCCAAGCCATTGACGCGCTAAGCGAGTCCATCAGCGCATTCGGTTACTGTAATCATGTATTTCTCTTGACAGATTTTAATGTTGACCTTATTCATACAGATAATGCGGCCGCTCGCGATcttataacatttttaactgAGCAAAATTTGGAGCAATTGATAAAGGAACCGACACGAATTGGAGATACGTCAGGGACACTTCTCGACTTAGTAATAACAGATTCGCCACAACTTTGCACTGGAGTAAATATATATCACAATCCCTCGCTGAGTGACCACGCGCTGATCGTTGCAAAGTTTAACATCTCGAGCCCGCGGCGGTTACCTAGATATTGCTATAAACGCTCGCTCTCTAGTATTAATCAGGAAACATTTTTAAGTGACTTGCGGAGTCTGCCGTGGACCGACGTCACAGATATAGATGACGTAAACAGCATGGTCCAACATTTCAATCGGCTACTTATTGAACTATTCGATGCGCACGCTCCGTGCAAAAAAATGCGTATTCAGGATAATATAAGCCCATGGATTACGGACAATGTAAAACTGATGATGTCGCTCAGGGACTCCGCGTTAGTAAACGCTCGTAGTACAGGAGCTGAGGCTCAACGGGAGTACTATAAAAGTCTGCGCAATTTTGTAAACGCATCAgttaaaagagaaaaaaatgcatattttgaattttatgttaataaaaatattcataaaccAAGTTCCATGTGGCACCATCTCAAACGTCATACAGTTGTGGGAGGCGGACCTTTGCTTAGTATACATCCGCAGCATCTTAACTGCCCTGAtgcaataaataagtttttcctCGATGTACCGGGACGGGCGGACGTAGATCCCGatattatagatttttttaGTTCTAATAAATTCACAGACAGTAAGTTTAGTATTCAATTATGCACGGAAAATGATGTctcaaaaataattaacaacataAGTACGGGGGCATCGGGTTTTGATGGCATTACAATCCACATGGTACGGATGACTTTGCCATCCACATTACCAATTATTACATACATGGTAAATAAGTCAATCGAGGCTGGCGTCTGTCCGGACGTTTGGAAGTGCGCTCGCGTGACACCTATCCCCAAGAGCTCTGTTATAGAAGACTTGAAAGATCTCCGGCCGATTAGCATATTACCTGTGTTGTCTAAAATAGTAGAAAGAGTTATATGTACACAACTCACGAAGTATTTAGAAAATAACCGCATCCTACCCGTCACGCAGTCCGGTTTCCGCAGCGGGCACGGCACCGCGACCGCGCTGGCGCACGTCGCCGATGACGTGCTGGCCGCTTCCGACGAGGGCTGCGGCACCATTTTGGTTTTGCTGGATTTCTCGCGAGCCTTCGATTGTCTTAATTCTAATTTGCTGATGGCTAAAATGGGCTATTACGGTATTTCCACCTCGGCATGTGAATGGTTTATGTCATATCTTAAGAATAGGACTCAATATGTCGAAATCGAAAATGAGGAGGGGGATATAAAAAAATCGCATATTGAGACAGTAGAAAGAGGTACGCCCCAGGGGTCAATACTAAGTCCTATATTGTTCATTTTGTTTACGGCAGATCTTCTAAATAGCGTTAAACACTGTAAAATACATCTTTACGCGGACGACACCCAAATCTACTACTCCTTCAAAAGCGATGAGACAAAATTGGCGGAATGTTTAATAAACGAAGATTTGTGTGCAATATATCACTGGGCGAGTAGGAATGCACTTGTTCTGAAccctttaaaaacaaagtacatgATTCTTGGGACTACCGCACAGTCTAAAAATATTAAAGGGAAAAACCCAATTATTAAGCTGCATCAGCAAATAATAGACCAAGTAGACATAGCAAAAAACTTGGGAATGTTAATGGATAGCGAGCTACGTTTTACGGAACACGTCAGTGTTAAGGTGAGAAATGCGTATTTTAGATTAAAAGCACTTTATAGCATTAGGGAGCACTTGTCAGAGAAAGTACGTAAGCTGCTCGTGGAAGCGTTGGTGTTGTCTCACTTTAACTACTGCGATACAGTCTACGGACCCAGGTTATACGCAAAGACCGCTCGAACTATACAACGGGTGCAGAATGCGTGTGCTAGATTCTGCTATAATGTCCCAAAGCGCGCGCACATAACACCTTTTCTTAACGAAAAACAGACACTGAAGATGACGGCGCGGAGGGAGCTCCACCTAGCTGCACAAGTCCACAAAATAGTGCAAACACAAAGACCTCAGTATTTGTTCGATAAACTTAAATggcctaaaaataaaaataaaactgaacaAGACCGAGGCGTTAGAAGTATGCATGCCAATAAACTTATTATGCCGAAACACAGATCCATGGGTTTCCGAGGAAGTTTTCGTTATCGAGCATCGAAAATCTGGAACGATTTGCCACCCCCCCTACGTACTAATATGTCGCTACCAACCTTCAAAATTAGCTTTCGAAAAGTTTTATTACATAAGCAACAAAGTGAACGATAA
Protein Sequence: MSLEDMATKLETPCVYSNDVNFLTESKEDSCTEFNEPVDEFNEDCLTFEGGLFDNNDQINPVMSLELGFESVCGIPGSVETQDLYLDHEVKDELVVGPEVLQKAAPSAIAQDSHEADEGTKPVKPFQCTVCEERFTFENNLQVHFRRHNTMRVTKCDVCQKRFTGAKSFEIHRRCHNRDRRYACHMCDKIFTSKQILENHLRVHSGEKPYTCEVCKKQFKQRGHLYEHSTLHTEVIQFKCAECGKGFRRKSNLHRHNLIHVKSEKMFTCECGKRFHTQANLDSHAKLHSQKPYPCETCGKPFPSKSQLRKHQKTHELSCKVCGQLFKMRSDLIEHKAVHKDERIFPCEMCGKKFKRRFALKTHVLLKSCVKKDGYIFKHKSRTGDGRGGGVGFYVRRELRARVRGHPPAALEQLWLEVSLPGGRRIAVGTAYRPVAVPVPQAIDALSESISAFGYCNHVFLLTDFNVDLIHTDNAAARDLITFLTEQNLEQLIKEPTRIGDTSGTLLDLVITDSPQLCTGVNIYHNPSLSDHALIVAKFNISSPRRLPRYCYKRSLSSINQETFLSDLRSLPWTDVTDIDDVNSMVQHFNRLLIELFDAHAPCKKMRIQDNISPWITDNVKLMMSLRDSALVNARSTGAEAQREYYKSLRNFVNASVKREKNAYFEFYVNKNIHKPSSMWHHLKRHTVVGGGPLLSIHPQHLNCPDAINKFFLDVPGRADVDPDIIDFFSSNKFTDSKFSIQLCTENDVSKIINNISTGASGFDGITIHMVRMTLPSTLPIITYMVNKSIEAGVCPDVWKCARVTPIPKSSVIEDLKDLRPISILPVLSKIVERVICTQLTKYLENNRILPVTQSGFRSGHGTATALAHVADDVLAASDEGCGTILVLLDFSRAFDCLNSNLLMAKMGYYGISTSACEWFMSYLKNRTQYVEIENEEGDIKKSHIETVERGTPQGSILSPILFILFTADLLNSVKHCKIHLYADDTQIYYSFKSDETKLAECLINEDLCAIYHWASRNALVLNPLKTKYMILGTTAQSKNIKGKNPIIKLHQQIIDQVDIAKNLGMLMDSELRFTEHVSVKVRNAYFRLKALYSIREHLSEKVRKLLVEALVLSHFNYCDTVYGPRLYAKTARTIQRVQNACARFCYNVPKRAHITPFLNEKQTLKMTARRELHLAAQVHKIVQTQRPQYLFDKLKWPKNKNKTEQDRGVRSMHANKLIMPKHRSMGFRGSFRYRASKIWNDLPPPLRTNMSLPTFKISFRKVLLHKQQSER

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -