Alat034526.1
Basic Information
- Insect
- Acleris laterana
- Gene Symbol
- -
- Assembly
- GCA_963966035.1
- Location
- OZ014464.1:6980930-6985444[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.2 5.2e+02 2.5 6.1 1 23 34 57 34 57 0.94 2 18 4.5 4.5e+02 2.7 0.1 2 23 84 106 83 106 0.88 3 18 0.071 7.1 8.4 0.9 3 23 129 150 127 150 0.94 4 18 0.019 1.9 10.2 0.1 1 23 156 179 156 179 0.93 5 18 0.0012 0.12 13.9 1.4 1 23 185 208 185 208 0.95 6 18 0.022 2.2 10.0 0.2 2 23 212 234 211 234 0.91 7 18 0.0013 0.13 13.9 3.5 1 23 241 264 241 264 0.96 8 18 0.00016 0.016 16.7 0.5 1 23 270 292 270 292 0.94 9 18 0.003 0.3 12.7 2.0 1 23 298 320 298 320 0.97 10 18 6.6e-08 6.6e-06 27.4 1.8 1 23 326 348 326 349 0.96 11 18 0.0019 0.19 13.3 1.1 1 23 401 424 401 424 0.96 12 18 0.013 1.3 10.7 0.6 2 23 497 519 496 519 0.95 13 18 0.015 1.5 10.6 3.5 3 23 527 547 526 548 0.95 14 18 0.65 65 5.4 1.2 1 23 553 576 553 576 0.86 15 18 0.0044 0.44 12.2 1.1 1 23 581 604 581 604 0.96 16 18 8.6e-05 0.0086 17.6 1.0 1 23 609 632 609 632 0.96 17 18 0.0002 0.02 16.5 0.5 1 23 638 660 638 660 0.98 18 18 0.14 14 7.5 0.1 1 23 669 691 669 691 0.98
Sequence Information
- Coding Sequence
- ATGGGCCGAGAGTACCGTAACAGAGAGGACCTAGTCGCACTGCTCACCGTAGTCATTCGAAACTCCACGGTCATTCCATTCAAGTGGCACGCCAATAAATTCATGTGCTTCTTCTGCTGCTGCCCTTTCGATGACAGCtccaaattaaaacaacacaCAAAAGAGGAGCACGAAGGAGCTAGGCTCAAAAATGTGCTGCAATACACTGTAAGGAAAAGCACCAGTATCAAACTAGACGTTTCGGAACTATCGTGCAAAAAATGCGGAGATCCAATGCCTACTTTGGACGAGTTCTTGCAACACATCTCATACACACACCAGTTTAAAATCAACACCAAAAACCACTGCTTGTATTCTTTCATATTAAGCGATGATGATATGAACTGTCTTGAATGCGGTATGAGTTTCAGGTTTTTCGGACCGCTCATCATTCATACACACAAATACCATAGTAGAACGAAACCGTTTCTCTGTGAGGTGTGTGGCCAAGGGTTCATAGCGCGAGCGAACGTCGAGAGCCATCGGAAGAACGCGCACGCAACCGTTGGAAGTTTCCCTTGCAAAGATTGCGATAATACATTCCCAACCAAACACAAGATGACACTTCACGTCGCAAAGGAACATTCCGCGATCAAATGCCCAAAATGCCCAGAGGTTCTCGCTAGTAAGTACCTCAAAAAGCGACACTTGGCGTTTGTGCATGACGTCGAAAGCGCCCAGTATAAATGCGAACAGTGCCCAAAGATGTTTTCCCTGAAAAATAAACTCCTGCAACACAAGCACAGGGTGCATTTGAAAGAGAAGAACTTTGCGTGTGAGATCTGTGGATTCAAAGTGTTTAGTAAGGATCTTTTGAAGAGACACATGGTGAAGCATGACGATGCGAGGCCGTTTGAATGTGATATATGTAAGAAGGCTTTCCAAAGGAAGAAGACTTTGGATTTCCACAGGAGAATACACACGAATGACAAACGGTATCAGTGCAAAGAGTGCGGCCGGTCGTTCGTGCAGTGGACGAGCTTGAAACTGCATCTTAGAGTGCACCATGCTAACAATACTGATACTAATAAGCAAAAGCCGAAAACGCACGACGTTCGAGTACCAACGCAGCAGGAGTGGGAGAAGGCCGCGGCGCGGCGACACGTGCACGCCGTGCTCGCCAACTCGTCGCTGCTGCCGTTCCGCTGGCGCGGCAACCGGTACATCTGCTTCTACTGCTACCAGACCTTCCACGAGGCCTCCGCGCTGCGGGCCCACACGCGCGCCGACCACCGCACCGTCGCCATCATGAGACACCTCACACAAAACAGAAACTGCGACAACTTCTCGCCAGTCAAAGTGGACGTCGGCGAAATATTAACGTGTCTAAAGTGTAACCACCAAGAACTAACCTTAGACGGGCTAATTGAACACTTGAAAGGGCACAAATTAATCACTGACATGGATCAAGAATGTTTCCTACCCTTCAAGTTAGCGGACAAACAGATATCCTGCTTGAGATGCGGTAAGTCCTACCAGTTTTTCGGTATGTTGTACTCTCACATGAATAAAGTGCATTTGGAGGGGACGAAGCGCATTTGCGAAACGTGCGGCCAACATTTTTTCTCAGACTTCAGCTTGCGCAAGCACGTTCAAATCCACCACGTGTCTGCAGAGTTTAAATGCTCCAGATGCCCCGCGACTTTCAAATTAGACTCGAATAAAGTCAGCCACGAATTCAAAGAGCATAATATTAAGTCTTTCAAGTGTtacaagtgtgatgaaatattCGGCTCGCAGTATTTGAGGCGATTGCACATGAACGGTACACATTTGAAGGCAGATTTCACGTGCCCAGAATGTTCCAAAGCGTTTCTCCACAAGTCTTTGCTGACTCGCCACGTGGCTAGAGTCCATTTGAAAGAGAAAAGCTTCTCGTGTCCGCTTTGTGGCGAGAAATTCTTCGACCTTCCAACTTTGAATATGCACACGAAGAAGCATTCTGGCATAACGCGGGTGTTGTCTTACCAGTGTAAGGTTTGCATGGTGAGCTTGGAGAGTAAGGTCGAGTTGGACGACCACATGGCTAGTCACAGCGGGCAGTCCTTGTCTATGAAGTAG
- Protein Sequence
- MGREYRNREDLVALLTVVIRNSTVIPFKWHANKFMCFFCCCPFDDSSKLKQHTKEEHEGARLKNVLQYTVRKSTSIKLDVSELSCKKCGDPMPTLDEFLQHISYTHQFKINTKNHCLYSFILSDDDMNCLECGMSFRFFGPLIIHTHKYHSRTKPFLCEVCGQGFIARANVESHRKNAHATVGSFPCKDCDNTFPTKHKMTLHVAKEHSAIKCPKCPEVLASKYLKKRHLAFVHDVESAQYKCEQCPKMFSLKNKLLQHKHRVHLKEKNFACEICGFKVFSKDLLKRHMVKHDDARPFECDICKKAFQRKKTLDFHRRIHTNDKRYQCKECGRSFVQWTSLKLHLRVHHANNTDTNKQKPKTHDVRVPTQQEWEKAAARRHVHAVLANSSLLPFRWRGNRYICFYCYQTFHEASALRAHTRADHRTVAIMRHLTQNRNCDNFSPVKVDVGEILTCLKCNHQELTLDGLIEHLKGHKLITDMDQECFLPFKLADKQISCLRCGKSYQFFGMLYSHMNKVHLEGTKRICETCGQHFFSDFSLRKHVQIHHVSAEFKCSRCPATFKLDSNKVSHEFKEHNIKSFKCYKCDEIFGSQYLRRLHMNGTHLKADFTCPECSKAFLHKSLLTRHVARVHLKEKSFSCPLCGEKFFDLPTLNMHTKKHSGITRVLSYQCKVCMVSLESKVELDDHMASHSGQSLSMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -