Alat033865.1
Basic Information
- Insect
- Acleris laterana
- Gene Symbol
- -
- Assembly
- GCA_963966035.1
- Location
- OZ014464.1:1113347-1118271[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.2 20 7.0 0.7 3 23 3 24 1 24 0.90 2 19 0.11 11 7.8 0.1 2 23 49 71 48 71 0.95 3 19 0.27 27 6.6 0.9 2 23 114 136 113 136 0.91 4 19 1.4e-05 0.0015 20.0 1.0 1 23 231 254 231 254 0.96 5 19 0.47 47 5.8 0.4 3 21 261 279 260 280 0.92 6 19 0.3 30 6.4 1.1 3 23 289 310 287 310 0.91 7 19 0.00031 0.031 15.8 0.6 1 23 317 340 317 340 0.95 8 19 0.12 12 7.7 1.8 1 23 345 367 345 367 0.95 9 19 1.2e-05 0.0012 20.2 0.4 1 20 373 392 373 395 0.94 10 19 0.0026 0.26 12.9 1.1 1 23 401 424 401 424 0.95 11 19 0.57 58 5.5 0.1 2 23 466 488 465 488 0.92 12 19 1.6 1.6e+02 4.1 2.4 3 23 560 580 559 580 0.96 13 19 3.5e-05 0.0035 18.8 0.2 2 21 585 604 584 605 0.94 14 19 1.7 1.7e+02 4.0 0.3 3 20 614 631 613 633 0.88 15 19 0.016 1.6 10.4 1.3 1 23 640 663 640 663 0.87 16 19 0.041 4.1 9.2 1.3 1 23 670 693 670 693 0.86 17 19 1.4e-05 0.0014 20.1 0.7 3 23 700 720 698 720 0.92 18 19 2.6e-06 0.00026 22.4 0.4 1 20 726 745 726 748 0.94 19 19 0.00047 0.047 15.3 3.8 1 23 754 776 754 777 0.95
Sequence Information
- Coding Sequence
- ATGGTTTGCGTGTACTGTTGCGATTCGTTTGATGACCCGCGCGACTATAGGAAGCACATGGAAACCGATCACAAGTGTTTCAAAGCAAACCTTGCTTTTATTCATTGCAGTCAAGGCTTTATAAAAGTAGACATCACTGATTTAAAATGCCGTGTTTGCGGAGAATCCTTACAGAACTTGGATTCTGCTGCAAAACATCTTAAAAATGCTCATACTAATCCaataataaatttgaatttcgaaatAGACAACGATGCCTATCTCAACGCAAAACGGAACGCCGAGATAATCGTGAAATATTCCACCGCCTACCCATTCAGGCTTCCAGAGAGTTCCATGGTTTGTGTGTACTGCTGTGAGAGTTTCGATGATCCGAACTTGTATAGGAAACACCAAAGCGATGATCATAAAACGTTCAAGGTTCGCATGGCCTTTGTTCATTGCAGCGAAGGTTTTATAAAAGTAGACTGCACTGACCTACGGTGTCGGCTATGCGCAGGATCATTCGAAACGTTGGAAGCGGTTGCTAGCCATTTGCATTTAGAACACGATATGAAATTAAAGCTTAATTTCGAACTAGGCATGCAGCCGTTCAAACTTGAAAAAGACAAGCTCATATGCGCGATATGCTGTATAAAATTCCCTTGCATAAGACAACTGAGTAGACACACACAATCCCATTTCCTCAAATACACCTGCGATACTTGCGGAAAGTCCTACGCAACCATAACAACTTTGAAAAATCATATACGATTCTCTCACGCGGGGAACGAACGAATCTGCAGAAAGTGTAGAATGACATTTTCAACTTTAGAAGCAAAAAGGGAGCATTTAAAGCTCTCCTCTAAATGCTGGTCCCATCTTTGCATGTTTTGCGGAGAACGGTTCATGACATGGACGTTAAAACAAAGCCATCTAATCCAGGTCCACGAAAGACCTAAACGTTTACATCCTTGCCCTGAATGCGGCGAAATATTTGCCGATAGAAAAAAATATCGCGTGCACTTCAAAATATCACACACTGATGATAATTTTACCTGCTCTTGTTGCGGTTCTAAATTCGACACGAAAAGAGCCCTGGAAGAGCACCGAGTCGTACACACGAAAGAAAAGTTGTTTCCGTGTAGCGTGTGCTCCAAATCGTTCCCTAGGAAAAAAAACTTGGCGCAGCACATGTGGGTTCATAGCGAGTATAAGAGGTTTGAATGTGGGCCTTGTAATAAGCAATTTAATCAGAGAGTTAGTTGGCGAACGCATATGAAGTCCTACCACCCTGATACGGTCGATTTCGACGacAAAAAAACTGTCTCCAAAGCTACCATCGAGAGACGAAACGCCGAGATAATAGTCCAGTACTCGACCGCGTACCCATTCAGGCTCCCTGGGAAAGTCCTGGTGTGCGTGTATTGCAGCGATAAATTCGAGGACGCCTTGCTATTCAGGAAACATATGGATGAAGAGCACGAACAGTTCAAAGTTTGGATGGCTTTTGGTCATGTGTCAGACGGCGACCTAAAAGTTGACTGCACTGATCTCCGCTGCAGAATGTGTTCAGCACAAAAGTTCCCAAACCTCAAAGATGTAGCCGAACATTTGTTAAATGTCCACGAATATCCATTAGATCTAAATAATCATTTGGGACTTCAACCGTTCACGCTATTCAAGGATACGCGCTACTGTGCAGTATGTTCAGAAAAATTCCCCTGCCTACGAACTTTGAGCAAACACACCCAAACTCATTTTGTCAGGGTCACTTGTGAAACGTGCGGAAAATCATACTCCACTTCTGCGTCTTTGACTGCTCATAGAAAATTCTGCAACAAGGGGAACACGCCTATCTGCAGAAAGTGTCTCAAGTCCTTCCCCACTCTACAAGCTAGGAAGGATCATTACGTGACTTCCAAATTATGTTGTCAACACACTTGTAATTATTGTGGCGAAAGATTTTACACTTGGAACATTAAACAACAACACATGGCGAATGTACACGGAAAGAAAAGAAAGGAGCATCAATGCCCAGAGTGCAAGGCTATATTTAGCACGCGGTCGGCTTATGCGTTTCACTTTAAAATTACACACACTACTGATTTCACGGATTGCAAGTATTGCGGTAAAAAATTCGACTCTGAATACAATCTCAAAAAACATGTTGTAGGTCACACTGGAGAAAAGTCTTTcgaatgccctgtctgctccaAGACATTTCCAAGGAGCAATAACTTGAAACAACACATGTGGATTCACATGGAGATTAAGAGATTCGAGTGTAAACCATGCAATAAGCAGTTTACACAAAAGATAAGTTGGAAAACTCACATGAGATCTCACCATCCGGAGCGCGAGTTAACTCAGCCGGAAGATGGCGATTCCAAATAA
- Protein Sequence
- MVCVYCCDSFDDPRDYRKHMETDHKCFKANLAFIHCSQGFIKVDITDLKCRVCGESLQNLDSAAKHLKNAHTNPIINLNFEIDNDAYLNAKRNAEIIVKYSTAYPFRLPESSMVCVYCCESFDDPNLYRKHQSDDHKTFKVRMAFVHCSEGFIKVDCTDLRCRLCAGSFETLEAVASHLHLEHDMKLKLNFELGMQPFKLEKDKLICAICCIKFPCIRQLSRHTQSHFLKYTCDTCGKSYATITTLKNHIRFSHAGNERICRKCRMTFSTLEAKREHLKLSSKCWSHLCMFCGERFMTWTLKQSHLIQVHERPKRLHPCPECGEIFADRKKYRVHFKISHTDDNFTCSCCGSKFDTKRALEEHRVVHTKEKLFPCSVCSKSFPRKKNLAQHMWVHSEYKRFECGPCNKQFNQRVSWRTHMKSYHPDTVDFDDKKTVSKATIERRNAEIIVQYSTAYPFRLPGKVLVCVYCSDKFEDALLFRKHMDEEHEQFKVWMAFGHVSDGDLKVDCTDLRCRMCSAQKFPNLKDVAEHLLNVHEYPLDLNNHLGLQPFTLFKDTRYCAVCSEKFPCLRTLSKHTQTHFVRVTCETCGKSYSTSASLTAHRKFCNKGNTPICRKCLKSFPTLQARKDHYVTSKLCCQHTCNYCGERFYTWNIKQQHMANVHGKKRKEHQCPECKAIFSTRSAYAFHFKITHTTDFTDCKYCGKKFDSEYNLKKHVVGHTGEKSFECPVCSKTFPRSNNLKQHMWIHMEIKRFECKPCNKQFTQKISWKTHMRSHHPERELTQPEDGDSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -