Alat023772.1
Basic Information
- Insect
- Acleris laterana
- Gene Symbol
- Sall1
- Assembly
- GCA_963966035.1
- Location
- OZ014452.1:16743347-16744648[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00081 0.081 14.5 0.1 2 23 114 135 113 135 0.97 2 11 0.00037 0.037 15.6 0.3 1 23 141 164 141 164 0.95 3 11 4.1e-05 0.0041 18.6 0.8 1 23 171 193 171 193 0.99 4 11 1.6e-05 0.0016 19.8 0.6 1 23 199 221 199 221 0.98 5 11 0.00065 0.065 14.8 1.3 1 23 227 249 227 249 0.97 6 11 0.00019 0.019 16.5 2.9 1 23 255 277 255 277 0.98 7 11 5.3e-07 5.3e-05 24.5 1.0 2 23 284 306 284 306 0.97 8 11 0.00039 0.039 15.5 0.8 2 23 312 330 311 330 0.90 9 11 7.4e-05 0.0074 17.8 1.6 1 23 336 359 336 359 0.93 10 11 0.026 2.6 9.8 0.3 1 23 365 390 365 390 0.95 11 11 6.1e-05 0.0061 18.1 2.5 1 23 396 419 396 419 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTTGTGAAGATAACTATTGCAGAGGACGATGGCTTCCCAAGCATGATATGTATTAACTGTACTGCTGAGCTTTCTGTATCGTATGAATTTGTACGAAAGTGCGAAACCTCGGACCTTACTTTAAAATCCATCAAACCAGATACTAAGGTCCATCCTGTACAGCCCTCGTTAGATATCAAGAAAGAAGACATTAAGGACGAACCGGATGACGGATATCTCAACTTTAGTTTCTTAGACAGTGATGACTGTCGATGGGATGATCTAGGAGAtaattgtaaacaaaaaaaaacaaaatacataaaaaagagGAAGAAGGGTAAAATGGAACCAATTCAGTGCGTCACTTGTGGGCATATGGCTTCTAGTCCCTCAGCGATGGAAATTCACATGCGGATACACACTGGAGAGAGACCGTTTCCTTGCCTCGTATGTGATTCGCGTTTTGCAACAAAAGGAGCTTTGAAAAGACATTCTGAAACCTTCCATAGTGTGAGAGAAAGAAAGTACACTTGTGAAACTTGTGGCAGTAGTTTCTTTagaaaaaatgaaataataactcATATGAGAGTACACACAGATGAAAGACCGTATGCATGCCCATTCTGTTCTAGAAGATTCCGACAAGTTGCTTCACTGATCCGTCACAAGAGAATTCATACCGGAGAAAAACCTTTTTCTTGTACACTTTGCAATAGAAAATTTTCCGATAAAACTGTTGCCAAAAAGCATTTATTAGTGCACAGTGATGAGAAAAAGTTTAGCTGCCACCTTTGCAATAAGTCTATGAAAAGCAAAAACGCCCTTAATGTTCATATGAAACTCCACActaataagaaacaaaatgtGTGTAACTACTGCGGCATGACCTTTTCTATGAAAGGTAATCTTCAAACGCATATACGCAGAAAGCATTCAGAAAAATCTGGACAATGCAACATTTGTACGAAGACTTTTTCTGACTTGGAAGTTCACATGCGTAAACACACTGGTGAAAAACCATTTGTATGTCCTGTGTGTCAGCAGAAGTATGCTACGCAGAGAAGTCTGACCCACCACATGGCATTTAGACATGAGAATTCTGCTAAATTTAAGTGCTCTATAGGGGAGTGTGTGAAAACTTTCCCGACAGCTACGATGCTGGAGTTTCATTTGTTGAAGCAGCATACTAATCATACTCCGTACATCTGCCAGCACTGTTCGCGCGGGTTTTTTAGAATGAGTGATCTTTCGAGGCACCTCAGAGTGAATCACATGGAACTGCAATTAAAAGTGCCAATCAAAACTCCCATAACCTAA
- Protein Sequence
- MEFVKITIAEDDGFPSMICINCTAELSVSYEFVRKCETSDLTLKSIKPDTKVHPVQPSLDIKKEDIKDEPDDGYLNFSFLDSDDCRWDDLGDNCKQKKTKYIKKRKKGKMEPIQCVTCGHMASSPSAMEIHMRIHTGERPFPCLVCDSRFATKGALKRHSETFHSVRERKYTCETCGSSFFRKNEIITHMRVHTDERPYACPFCSRRFRQVASLIRHKRIHTGEKPFSCTLCNRKFSDKTVAKKHLLVHSDEKKFSCHLCNKSMKSKNALNVHMKLHTNKKQNVCNYCGMTFSMKGNLQTHIRRKHSEKSGQCNICTKTFSDLEVHMRKHTGEKPFVCPVCQQKYATQRSLTHHMAFRHENSAKFKCSIGECVKTFPTATMLEFHLLKQHTNHTPYICQHCSRGFFRMSDLSRHLRVNHMELQLKVPIKTPIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00325666;
- 90% Identity
- -
- 80% Identity
- -