Alat033869.1
Basic Information
- Insect
- Acleris laterana
- Gene Symbol
- -
- Assembly
- GCA_963966035.1
- Location
- OZ014464.1:1125666-1132385[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00098 0.098 14.3 1.1 1 22 81 102 81 102 0.95 2 23 0.79 79 5.1 0.1 2 23 130 151 130 151 0.95 3 23 0.027 2.7 9.7 0.6 2 23 174 195 173 195 0.97 4 23 0.02 2 10.1 0.1 1 23 199 221 199 221 0.95 5 23 0.31 31 6.4 0.5 1 15 226 240 226 249 0.78 6 23 0.03 3 9.6 0.5 1 23 255 278 255 278 0.95 7 23 0.00036 0.036 15.6 1.0 1 23 285 308 285 308 0.98 8 23 0.00035 0.035 15.7 2.5 1 23 315 337 315 337 0.97 9 23 2.4e-06 0.00024 22.5 2.8 1 23 343 365 343 365 0.98 10 23 0.00023 0.023 16.2 0.5 2 23 369 391 369 391 0.95 11 23 0.0067 0.67 11.6 0.2 1 23 468 491 468 491 0.95 12 23 0.57 57 5.6 0.9 2 23 518 540 517 540 0.92 13 23 0.14 14 7.5 0.1 1 23 591 613 591 613 0.95 14 23 5.8 5.8e+02 2.4 0.4 1 9 681 689 681 694 0.80 15 23 0.13 13 7.6 4.6 1 23 747 769 747 770 0.93 16 23 0.0086 0.86 11.3 2.6 1 23 838 860 838 860 0.97 17 23 4.6e-05 0.0046 18.5 0.8 1 23 864 886 864 886 0.98 18 23 0.0003 0.031 15.9 0.1 1 23 891 914 891 914 0.96 19 23 9.9e-05 0.0099 17.4 0.8 1 23 920 943 920 943 0.98 20 23 0.025 2.5 9.8 0.2 1 23 950 973 950 973 0.95 21 23 0.001 0.1 14.2 1.4 1 23 979 1001 979 1001 0.96 22 23 2.7e-06 0.00027 22.3 0.6 1 23 1007 1029 1007 1029 0.99 23 23 1.3e-05 0.0013 20.2 2.6 1 23 1035 1057 1035 1058 0.95
Sequence Information
- Coding Sequence
- ATGCCGCCACAGTTGGTACAAAAAAGCCTGCGCGGCGCGCACAAAGCGGgACGCGGCCAAACCAAACACGAGACTGTGATAAAAGTAGAGGCCACCGATGTTCCAATCGAGCATTTGCTTAAAGAAAAGCCACGTTACCAGAGAAGTGCCAGGGCGGAGGCTAGGTTTGCTACAAAGAAAAATGCGAGCACTATCCTTGAATGTTGGTCTGTTAATCCCTTCAGATGGAAAAGAAACCAGTTCAAATGTGCTTACTGCGAAGCCAGCTTCACAGATTGCAATCTTCTAAGACAACACATAAGCACATGTTCCCCCCAACACAGCGTCAAAGTCATCTACAGcaaatttaaagaaatgtcTCTCATCAATATCGATGTCACTGACGCCGTTTGTCGTCTCTGTTCAATGCCGTACACCGACGTGAAACAGATGCGAGAACACGTCATGGAACACGGATATGATTTTGAAATTAACCACCCAGATGGTGTTTTACCTTTCTGCCTCGACAAAGAATCTTGGAAATGCGTGCTATGCCAAGAGAAGTTCAATAATTTCTTGAAACTCTACGAACATATGAATGTGCATTACCAGCATTATATTTGCGCTACGTGCGGGAAAGGATATATGACGGCGCCTAGGTTGAGGAAGCATTCGGAAGTTCATATAAGTGGGTCATTCCCTTGTAATGAATGTAGTAGGGTATTCACCATGAGGGCTGCTAGGGATTACCATAAGGCTCATGCACACGCGAAGGCTCCTAGGTATGAATGTCCTCAATGCAACATGCGCTTCGACGGCTACTATGATCGCATGAACCATCTCAATGAGACCCATAGAGAAAAAGAAGTGTCTTACAGCTGCCCTCATTGCGAACTTACGTTCAAAACATCAGGAAAGCGAGCCATTCACGTCCGAACCGTCCACTTCCCTCCGCAGCGCGATTTCAGATGTCCGTGCTGTGAATGGAATTTCAAAACTGCCTATGAACTGAAACGGCACATGGTCAAACATACTGGAGAAAGGAATTACCATTGTAGTGTGTGCGACAAGTCATTTCCAAGGAATAGGGCACTGAGGACTCATCTCAAGACTCATGATGACGCGAGTTGCAAATGGTGTGGTGCATTGTTCAAACAGCGTTCTCAATTGATGACCCATTTGAGGGAAATTCATTCGGATATGTgTTCCGCTAGTGCGGACTCGGAGGCAAATGTAGGAGTTAGACGAGTTAGGAAGTTAAAGGAGAATGTTAGTGCGCGCCAAATGCGCAGGCGTCGCCGCGCAAACAACGAGGTGCCAGAGGAGTCTGCAAAACGCATAGCAAAAACAATGATGCGTAGAAACGCCATGACCCTTCTAGAATGTTCCACCGCTTGGGCATTTCGCTGGTTCCATAGCGCCTTCTACTGTTCGTACTGCGACGCTAAGTTTGTAGACACCGGCCCGCTTCGCGAACATGTCCAAAACAACCACCTAAACCAACCGCCCACCAAAAATATATTCGCCAAGTTAACTGAAAATAACATGGTCAAGATCGATGTAGGGAATCTCAGCTGTAGGCTTTGCCATCATCCTTTAACTGATATAGACGATCTGAAAGACCATTTAGTATCTCTACATGGACGGACTTTGAACTCTGGCTACAGCGATGggTCCGTCGACCTCAAACTTAAATGGAAACCGAAGCGCAAGTATAACGATCATAGAGACAACGCGGCTATTTTAATAGAGTGTTCCAACGTGTGCCCATTCAGGTGGAAGAGAGGCGCGTTCACCTGCGCTTTCTGTCCCATCTCCTTCGGAGACTTTAGTAGCATCAGAGACCACGCGCTCGAGCACCCTAACAGAGTAGAAGCTATGCGTCTTGCTCGCCCATTAGACAATGTCAAAGTAGAAGTCAGTTTTCTACGCTGCGAACTCTGCTTACAACTCGTCAAAGACGTTGAAACTTTGAAAGACCATTTAATCTTAACCCACAATAAGCCCATAAGCAAAGATCATAGCATTGGCATCACTCCCTTCCTTATTAACGAAAAAGACTTCCTTTGCACGCATTGTGGAAAGAACAGAAGAAAGAGCATAGAGCACGAACAGTTAATGAACTCTGAAGATGTTACCACGAAACGTGCAGCCGCCGATCGGGATGAGGCCGAACAGCGGCGCGCCAACTTTAGGAAAAATATATCTGCTATCATAGGCACGACCACGGCGTACCCCTTTAAGTACAGACGAGGGATGTATCTCTGTTACTACTGCAAACACACGTTCATAGAGCCAGAGAAGCTCCGGCTCCACAACAAAATGCACCATTCTGAACCGAAGCCTTTACTCCTACCCAAACCTAGGAAATATGAACCGGTCAAAATAGACTTTGTTGGCGCATTTTGCAGAGTCTGCTTAGATGAGATAGACGATTATACCACGCTGAAAAAACACCTAGCTATACATAATAACGTCATCGATACAACTCTCAGCGAGTCTGTTCTACCATACAAATTGGTTAAAGACGAACATGTATGCCAGCTCTGTGGTAAAATGTACGAGGTGTTCTTAACCTTACATAAGCACATGAACGTTCATTACGACCATTATATATGCGAGAAATGTGGGAAACGATTCGCGACATCCCAGCGTATGGTCAACCATGTACGAACGCACGAACAAGGCGTGTTCCCTTGCAAGCAGTGTGGGGAAACGTTTAGCTCCTACGCACCTCTGTACAGTCACATTGCGAAAGTACACCGATCAAATAAGAGATATAAGTGTCCAATTTGTAATGAGAAATTCGTTTCCTACAAACAGAGATTGAAACATTTGCGCGTTGTACATAAGCAAAAGACGCCGGATTTTCCTTGTCCATCGTGCGAAAGAATTTTTGACATGGCTAGTAAGAGGACCGCGCATATAAGATTCCAACATTTGCAGGAACGGAATCACGTGTGCTCCGTTTGTGGCATGAAGTTTTTCAGTAATTATGAGCTTCAGGAACACTCCATCAAGCATGGTGGCGAAAGGATCTACCAATGTGACGTTTGCAAGAAGGCATACGCTAGGCTTAAGACTTTGAGAGAGCATATGCGGATACATAATAATGACAGGCGCTATGCGTGCCCTGATTGTGGACAGTCGTTCGTTCAGAAATGTAGCATGAAGCAGCATGTACGAGTGCATCATCCTACGAATTTAAAtatacttcaataa
- Protein Sequence
- MPPQLVQKSLRGAHKAGRGQTKHETVIKVEATDVPIEHLLKEKPRYQRSARAEARFATKKNASTILECWSVNPFRWKRNQFKCAYCEASFTDCNLLRQHISTCSPQHSVKVIYSKFKEMSLINIDVTDAVCRLCSMPYTDVKQMREHVMEHGYDFEINHPDGVLPFCLDKESWKCVLCQEKFNNFLKLYEHMNVHYQHYICATCGKGYMTAPRLRKHSEVHISGSFPCNECSRVFTMRAARDYHKAHAHAKAPRYECPQCNMRFDGYYDRMNHLNETHREKEVSYSCPHCELTFKTSGKRAIHVRTVHFPPQRDFRCPCCEWNFKTAYELKRHMVKHTGERNYHCSVCDKSFPRNRALRTHLKTHDDASCKWCGALFKQRSQLMTHLREIHSDMCSASADSEANVGVRRVRKLKENVSARQMRRRRRANNEVPEESAKRIAKTMMRRNAMTLLECSTAWAFRWFHSAFYCSYCDAKFVDTGPLREHVQNNHLNQPPTKNIFAKLTENNMVKIDVGNLSCRLCHHPLTDIDDLKDHLVSLHGRTLNSGYSDGSVDLKLKWKPKRKYNDHRDNAAILIECSNVCPFRWKRGAFTCAFCPISFGDFSSIRDHALEHPNRVEAMRLARPLDNVKVEVSFLRCELCLQLVKDVETLKDHLILTHNKPISKDHSIGITPFLINEKDFLCTHCGKNRRKSIEHEQLMNSEDVTTKRAAADRDEAEQRRANFRKNISAIIGTTTAYPFKYRRGMYLCYYCKHTFIEPEKLRLHNKMHHSEPKPLLLPKPRKYEPVKIDFVGAFCRVCLDEIDDYTTLKKHLAIHNNVIDTTLSESVLPYKLVKDEHVCQLCGKMYEVFLTLHKHMNVHYDHYICEKCGKRFATSQRMVNHVRTHEQGVFPCKQCGETFSSYAPLYSHIAKVHRSNKRYKCPICNEKFVSYKQRLKHLRVVHKQKTPDFPCPSCERIFDMASKRTAHIRFQHLQERNHVCSVCGMKFFSNYELQEHSIKHGGERIYQCDVCKKAYARLKTLREHMRIHNNDRRYACPDCGQSFVQKCSMKQHVRVHHPTNLNILQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -