Alat032731.1
Basic Information
- Insect
- Acleris laterana
- Gene Symbol
- -
- Assembly
- GCA_963966035.1
- Location
- OZ014462.1:2016727-2017368[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.2e-07 0.00038 21.2 0.0 1 37 16 52 16 56 0.94 2 2 8.1 4.2e+03 -1.3 0.0 22 31 159 168 154 175 0.85
Sequence Information
- Coding Sequence
- ATGCCGCGAAAGTATAAGAAAAAAGGGACCAGAACGGGAGACGTAGATGAAGATGCGATGAAGTGTGCTATACAGGaagttttagaaaaaacttTGTCAATACGGAAATCTGCGGCAAAATACAGGGTCAAACCTTCGACACTCGAAAGTCGCATATCAAATCTTCGTAAAAAAGCTGCTGCGGAAACGGATAATAGCCAACCATCGCGTGTTTTTATTTCCAAGTTTACGTCGAATCAGGTATTTACAATAGAAGAAGAGACTCATTTAAACAAATACATTACTGACTGCTCTAAGATGCACTATGGGTTGACACTTGTACAGGTGAGAAGATTGGCTTATGAGTTTGCAAAAGCAAACCAACTTAAGTATCCTCTTAGCTGGAATGACAAACAAATGGCAGGACAAGATTGGCTGGAAAGTTATCGCAAGCGAAACATAAATTTAAGCCTAAGAAAGCCAGAAAACACAAGTGCGGCAAGATCTTATGGATTTAACAAGACGGCTGTGGTCGAATTCTTCAATAACCTAGAAGaggtttataaaaaatatgaatttactGCAGATAGAATTTATAACTttgacgaatcaggaatatCTACAGTGATGAGCACGCCTAAAGTTTTGGCTGAAAAAATCTAA
- Protein Sequence
- MPRKYKKKGTRTGDVDEDAMKCAIQEVLEKTLSIRKSAAKYRVKPSTLESRISNLRKKAAAETDNSQPSRVFISKFTSNQVFTIEEETHLNKYITDCSKMHYGLTLVQVRRLAYEFAKANQLKYPLSWNDKQMAGQDWLESYRKRNINLSLRKPENTSAARSYGFNKTAVVEFFNNLEEVYKKYEFTADRIYNFDESGISTVMSTPKVLAEKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -