Ahol019318.2
Basic Information
- Insect
- Acleris holmiana
- Gene Symbol
- stc
- Assembly
- GCA_949316455.1
- Location
- OX438770.1:4754297-4768568[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.8 4e+04 -4.0 1.6 15 19 609 613 608 613 0.81 2 10 0.027 5.9e+02 1.9 1.5 2 10 641 649 641 649 0.93 3 10 0.00012 2.8 9.3 20.3 4 19 657 672 655 672 0.93 4 10 2.7e-08 0.00059 21.1 8.5 1 18 708 725 708 726 0.98 5 10 0.0047 1e+02 4.3 7.2 1 11 754 764 754 765 0.95 6 10 0.095 2.1e+03 0.1 0.3 4 10 769 775 768 777 0.92 7 10 1.1e-05 0.25 12.7 12.9 3 19 783 799 781 799 0.91 8 10 2 4.4e+04 -4.7 0.7 6 10 828 832 828 833 0.69 9 10 0.0026 58 5.1 10.6 10 18 846 854 842 855 0.92 10 10 1.1e-08 0.00026 22.2 14.7 1 16 891 906 891 911 0.88
Sequence Information
- Coding Sequence
- ATGTCTCAGTGGAACAATTCGTACTCTTACAACCAGCAACACCAAGGCTCGGGTACTTGGAATGGTGAATTAAGCAACCAGTACACAAATCAACCCTATGTACCTACCAGCCAGCCAACATACGAGCCAAGCAACCAGTATGTAAACTTTCAGGAATTTCTGTCCCAGATGCAGAGCAGCAGCGCAGGCGCATCAGGTTCCGGGACATACAACAATGCTCAGTATCCAAATTACTCCAACAATCAGTATGAATACCCAACCATCCCATCAACTTCTCAAAATGCTAGTTACTTTTCAGCAAACTCAAATGTAGTGAATGGTGCAGAAGGAATCCAAACCACTGCTCAAAGCCAGAATAGAGGTGCATCTGCAACCAACTATGACAACCATATGGTATTTAAGTCCAATCTAACGCCAACTGCAACTGAATTTGTGCCAAAAGGGTTGCCGGCACACCAGAATTCTGGGGCCCAAAACTCTAATTCTTTACATGTCACTGCCACATATAATGGAGTTTCAGAAACTAAGAATAAACACATGGGGAAAGGAAACTGGAGAGAAAAGCAGTCTTCCCAACCTAGTAGTTCACGTagctataatgaaaataagaatGAACAAGAATCAGGAGGAAAAACAGAGAAAGACCATCCCAGTAGTTCTCAGAGTTCAAATGAATCTAAGAATGATCAGGATTCCAAGAAGAAACCAGAAAAGGATCGCCGGCgacgtaataataatttaagtagTCAAAAGGAATCCAGTAATAAAGGTCATGAGCATGGTGGGCTAAATGAAGCTGAGGGTGGTGACTATGAGTCCAATGATTATAGCCATGACTCCAACAAGCACAGCACAGAGTATAACAATCGCAGTTATGAACCACATAGTAGAAAATATGAAGCAAATAGTCGCAGTAGCAGGAAAAACGAATCTAGCCGTAGCTTTGAGAGTAACAATCAAAGTAATGACCCTGGTTATAAAAATAGTGAATCTGTCCGTAATGATTGTAATGACCAATCGagaaataatgattttgatagCCGACAATACGAGACTGGCAATCGAAATAACGATAACAGTGGCCGAAATTTTGACTCGAGAAGACGCAATTGCGACTCGAATAATCGCCACTACGAAGGAAATAGTCGTAATTATGATTCGTCATCCGCAAACCGCAACTCTGACTATAACCGCAGGACTGATTTCAATGGACGTGACAGTGATTACAATAGCCGAAATAACGACTACAATGGGCGTAATCAAGATTACAGTAGTCGCAATAATGATTACAATGGCCGGAACTATGACTCAAGTAATCGGAATTACGATAATAGGGGCCAAGGAAAGAATTCAAAGTCAAAGAATAAGGAAGCTGATAATCGCACATTCTACAATAGTTCAGTTAACAAAAGTAGTCAGGATGTCAGAAGCGGAAGAGGTGAAAGAGGTGAGAGCTCAGGAAGGACTAAAAATTGGGCTGGGAGTCAGAGGGTGAGGCCATCAGAGAGAGCAGATGATGAACAATTTGCTAAAGGGTATTTAGATCACCGTGAGGACAACAGATATTCAAAAGGATCTAGGTCAGAAGCCACGTTTAGCCCTTTGAGAAGTAGGAACAAGCAAGTAGATCAAAGCAACACCGACATGACCCAACGGGAGCGTCTCTCCGAACAGCTGGACAAGGGTGCGCTAGAGTGCCTGGTGTGCTGCGAGCGCGTGAGGCAGACGGACTCGGTGTGGTCCTGCGGAAACTGCTACCATGTGCTGCATCTGCGCTGCATCAGGAAGTGGGCTTTGAGCAGCGTTATAGaGGGCAAATGGCGCTGCCCGGCGTGCCAGAACACGAGCGACGAGATCCCGACGGAGTACCGCTGCATGTGCGGCGCCGTGCGCTCGCCGGAGTACCAGCGCGGCGCCAGCGGCGCCCACACCTGTGGACAGGCGTGCCAGCGCGCGCGCTCGTGCCCGCACCCGTGCACGCTGCCGTGCCACCCCGGGCCCTGCCCGCCGTGCCAGGCCACCGTCAGCAGAAAATGTGGGTGCGGCGCGGAGACGCGCTCGATCCTGTGTAGCAGCAAGCTGGCGCAGGTGTGCGGGCGCGTGTGCTCGCGCGTGCTGCTCTGCGGCGTGCACGCCTGCGCGCGCGCGTGCCACGAGGGGGCGTGCGACGAGTGTGCCGAGACCGTGGACCAAGTGTGCTACTGCCCGCTGGCGCAGCGGCGCTCGGTGGCTTTTGTTGCTGGTTATCAGAAACTGTCCTGCGGTCGCCACCGCTGCCGAGCGGCGTGCTGCAACGCCGCCACGCACCGCTGCGGCGTCGTGTGCGGCCGCATGCTGGCCTGCCAGCTGCACCGCTGCGACCAGTTCTGCCACACCGGACACTGTGCCCCCTGCACGCGTGCCAGTTTTGAAGAATTAACGTGCGAATGCGGCGCCGAAGTAATTTTACCACCAGTGCCTTGTGGAGCCAAGCGACCCGCGTGCTCGGCGCCTTGCCGCCGCCCGCGGCCCTGTTCTCACCCCCCGCACCACTCCTGCCACCAGGGCGAGTGCCCCCCCTGCGTCGTGCTCACCACCAAGCGCTGCCACGGCCAACACGAGGAGCGCAAGACTATTCCGTGTTCGCAAGAGGAGTTCTCTTGCGGCCTGCCGTGTGGGAAGCCTCTACCTTGCGGAAAGCACACCTGCCAGAAGACCTGTCATAAGGGACCGTGTGACACTGGCAATTGCACGCAAGTCTTGACTATAACATTCCGAGTGGGAGGAGCAACCAATCTCAATGGCTTGCTTCGCGAAAAAATCAACGCGCTCATTACCTGCAATGCCTGCATGACCAGGGATCCAGGCCAAAACCACATCAATGCCCAGAGAATGACAGCGATGAAGAACCTCTCTAGACTTAAGGTTAATTAG
- Protein Sequence
- MSQWNNSYSYNQQHQGSGTWNGELSNQYTNQPYVPTSQPTYEPSNQYVNFQEFLSQMQSSSAGASGSGTYNNAQYPNYSNNQYEYPTIPSTSQNASYFSANSNVVNGAEGIQTTAQSQNRGASATNYDNHMVFKSNLTPTATEFVPKGLPAHQNSGAQNSNSLHVTATYNGVSETKNKHMGKGNWREKQSSQPSSSRSYNENKNEQESGGKTEKDHPSSSQSSNESKNDQDSKKKPEKDRRRRNNNLSSQKESSNKGHEHGGLNEAEGGDYESNDYSHDSNKHSTEYNNRSYEPHSRKYEANSRSSRKNESSRSFESNNQSNDPGYKNSESVRNDCNDQSRNNDFDSRQYETGNRNNDNSGRNFDSRRRNCDSNNRHYEGNSRNYDSSSANRNSDYNRRTDFNGRDSDYNSRNNDYNGRNQDYSSRNNDYNGRNYDSSNRNYDNRGQGKNSKSKNKEADNRTFYNSSVNKSSQDVRSGRGERGESSGRTKNWAGSQRVRPSERADDEQFAKGYLDHREDNRYSKGSRSEATFSPLRSRNKQVDQSNTDMTQRERLSEQLDKGALECLVCCERVRQTDSVWSCGNCYHVLHLRCIRKWALSSVIEGKWRCPACQNTSDEIPTEYRCMCGAVRSPEYQRGASGAHTCGQACQRARSCPHPCTLPCHPGPCPPCQATVSRKCGCGAETRSILCSSKLAQVCGRVCSRVLLCGVHACARACHEGACDECAETVDQVCYCPLAQRRSVAFVAGYQKLSCGRHRCRAACCNAATHRCGVVCGRMLACQLHRCDQFCHTGHCAPCTRASFEELTCECGAEVILPPVPCGAKRPACSAPCRRPRPCSHPPHHSCHQGECPPCVVLTTKRCHGQHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCQKTCHKGPCDTGNCTQVLTITFRVGGATNLNGLLREKINALITCNACMTRDPGQNHINAQRMTAMKNLSRLKVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -