Ahol027304.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acleris holmiana
Gene Symbol
-
Assembly
GCA_949316455.1
Location
OX438777.1:11348136-11353605[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.98 1.1e+02 4.7 1.7 2 23 612 630 611 630 0.74
2 5 3.3e-05 0.0039 18.8 0.5 1 23 636 658 636 658 0.97
3 5 0.059 6.9 8.6 3.3 2 23 665 686 664 686 0.90
4 5 0.00013 0.015 17.0 2.2 1 23 692 714 692 714 0.98
5 5 0.00021 0.025 16.3 2.7 1 23 720 743 720 743 0.97

Sequence Information

Coding Sequence
ATGGAGGACAAGTCTTTTCTATGGACTAGCGagcttacaaaaaaaatgcttgaacTCCGATTTGAAAAGAACTGGCTGTTTAAGAAGAAAAAACAACCGTGgatGGAGTTCCGCtctattttaatagaaaatgggTACCCAGAATCAATGTCCGTAAATCATGTGCGCAAGAAGTGGTCATATACCTATGATtgttataaaatagcaaaaaagacaaaaaacaagAATTGGAGGTATTATAAAATGTTTGAGAAACATTATGGTAAAACTGGTATCCTAGATAAATATGAGTCATGGAATGATGAGTGGAGACTGAGGCTGGTTGTTTGCATCACTGAGGCCAAAGAAATCAAAATGGATTATCACTACTTTTGGAGAGCAGTGGAAAAAGCTATGCGGAGTCAGGCACTGCCCACCAACTGTTGCATCCAGGACATAAAAGGATTATGGCAACACATTATAACTACTTTTAATAGAAAGTACAGACAAAATAAGAAAAAGGACATTGATCCCAACTGGCCGTTATATGACGCCATGGTGGATTACTACCAGCGCTTTGATCCAGACTATCTGGTCAAGCTCGAGACAGAAACGCCTATGGAATTTTTCAGTCGCCATCGGAAAACTTccaataaatatgtaaaaaataaaaatggcgcCAGCAAAGACAATCAAAGTGAGGAGTTTCACTGGACCAAGGACATCACAGAGACATTCATACAGATACGACTACAAAATGACTGGTTGTTCCGTGAGAGGAAATGGGCATGGAATGACCTACTTAACATTATGAAGAAAGAATATGGCTTTCCGGAAACGTTAAACGGTAGGGAGATATGTCGGAAGTGGGCGGCGACTTTTGGGgaataCCAAAAGGCGAAGGCGACTAATAACAAAACTTGGATCTACTACACATTGTTCGAGCTGTACTTGGGTGAAGAAAGACTGAGTCTAAATCCTCTAGTAGGGTGGCAAGAAGAATGggttttgcaccttatttatgCAAGGACAGAAATGGATTACCTGTTCAAGTTCACACTGAGAGACCAAAGTGCTGCGTGGAGgGAAGTGGAAAAAAAGTTGCGAAGCATCGACATACCCATCGACCACAGCTTGCTTGATTTGGCAGAGGTTTGGACGCACCTGTTGAAGACTTTTAGGTGGAAGCGAAAATTTGCCGACAAAGGCATGCTGAGCGAACAATGGGCGTACTACGGCGCTATGGAGCACTACGAGGAGATCAAAATTAAACCCAAAATCAAGAAACAACAGGAGGACCACGATAGTTTCGATCCCGTAGACCATGATGATGACTTCGAGGATGATATAAAGCTTTTTGACTTGAAGCAGAGACTGCGGCCGAAGGTGGAGGAGGACGCGAGCCAGTGTCGCGCCtgccgcggcgccggcgcctgcGTCGACGTGCTCGCGCGCCGCGCGGACGGCCTCCCGCTGGCCGACAAGCTGAGGGCCGTGGGGGGGATTGAGGTAGAAAAATCAGACGAGCTACCATCTCAGATTTGCCATGAATGCCTTAAGGACTTGGAACACGCATACAATTTTCGGCAGAAATGTCAAGAAGCAGACAAGCAGTTCCGCGCGAGGAGATCGATTAAAGTCGAAGCAACATTCGACGATATTAAACACAGTGGCAATGATCACTCTGAAAAAGTTGGCAGTCATGACGTGGACGACTTTGACACTCATTACGACGTGGATTTTGCAAGCGACACTGAAATGAAACAAGAGAAAAAACTAGCAAAAAAGGAATCAAAGAAAATATTagtaagaaagaaaaagaaattgcGGAAACTGAGGTACGACTATTGGAAAGTTTGCGAAGTGTGCGGGAAGCACACGCGCAACTTGCGGAGTCACTTGGATATGCATTCCACGGGGAAGTTCTACTCTTGTGACGTTTGCGACAagaagttcaagttcaaaagtgGTTTGGTGATACATAAAGCGGTCCATGACCCGACGCCTAAAAAAACCTGTGAAGTTTGCGGAAAAACTTTCCATATTTTAGCTCAGTATCGAAGGCACTTTGTGCACCACGCGAACCAACGGAACCACGAGTGTGACACGTGCGGGAAACGTTTCAATACATCTGAAATATTAACGGTGCATAAGAGAACTCATACCGACGAAAGACCCTTCAGCTGCTCCGAATGTTGGAAAACCTTTAGGACGTCCGGCTGCGTCAGTAGACATAAAAGAATTGTACACACTAAGGCAGTAAAGAATCAAGTATATTACATTAGTTTTATTTCCTCCCCTACTTATTAA
Protein Sequence
MEDKSFLWTSELTKKMLELRFEKNWLFKKKKQPWMEFRSILIENGYPESMSVNHVRKKWSYTYDCYKIAKKTKNKNWRYYKMFEKHYGKTGILDKYESWNDEWRLRLVVCITEAKEIKMDYHYFWRAVEKAMRSQALPTNCCIQDIKGLWQHIITTFNRKYRQNKKKDIDPNWPLYDAMVDYYQRFDPDYLVKLETETPMEFFSRHRKTSNKYVKNKNGASKDNQSEEFHWTKDITETFIQIRLQNDWLFRERKWAWNDLLNIMKKEYGFPETLNGREICRKWAATFGEYQKAKATNNKTWIYYTLFELYLGEERLSLNPLVGWQEEWVLHLIYARTEMDYLFKFTLRDQSAAWREVEKKLRSIDIPIDHSLLDLAEVWTHLLKTFRWKRKFADKGMLSEQWAYYGAMEHYEEIKIKPKIKKQQEDHDSFDPVDHDDDFEDDIKLFDLKQRLRPKVEEDASQCRACRGAGACVDVLARRADGLPLADKLRAVGGIEVEKSDELPSQICHECLKDLEHAYNFRQKCQEADKQFRARRSIKVEATFDDIKHSGNDHSEKVGSHDVDDFDTHYDVDFASDTEMKQEKKLAKKESKKILVRKKKKLRKLRYDYWKVCEVCGKHTRNLRSHLDMHSTGKFYSCDVCDKKFKFKSGLVIHKAVHDPTPKKTCEVCGKTFHILAQYRRHFVHHANQRNHECDTCGKRFNTSEILTVHKRTHTDERPFSCSECWKTFRTSGCVSRHKRIVHTKAVKNQVYYISFISSPTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01464634;
90% Identity
iTF_00010695; iTF_01464634;
80% Identity
-