Ahol039454.1
Basic Information
- Insect
- Acleris holmiana
- Gene Symbol
- -
- Assembly
- GCA_949316455.1
- Location
- OX438790.1:4711453-4728117[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.02 2.4 10.1 5.0 1 23 309 331 309 331 0.99 2 11 0.24 28 6.7 2.9 2 23 339 360 339 360 0.97 3 11 8.9 1e+03 1.7 0.0 2 17 365 380 364 387 0.74 4 11 2.4 2.8e+02 3.5 4.0 1 23 393 415 393 415 0.96 5 11 5e-06 0.00058 21.4 1.5 2 23 420 441 419 441 0.96 6 11 0.00043 0.051 15.3 1.6 1 23 447 469 447 469 0.98 7 11 0.04 4.6 9.1 1.6 2 21 476 495 475 500 0.92 8 11 0.053 6.3 8.7 0.5 1 16 508 523 508 531 0.77 9 11 0.0025 0.3 12.9 0.9 3 23 539 562 537 562 0.92 10 11 2.2e-06 0.00026 22.5 1.5 1 23 571 593 571 593 0.98 11 11 2.3 2.7e+02 3.6 0.1 3 23 601 622 599 622 0.91
Sequence Information
- Coding Sequence
- ATGGATACACAGTACAATAACACCTTCTTGAGCTATGTATGTGAAGGTTGTTTAAGCTCGGGTCGAAAACTAAATGCAATTTATGATGTAGACTACAAACGAATATTTCTAAACCTGTTAGATTCTTTGGATCAAGTAAACCAAGACCTGTTACTCTGCTGGGAATGCACCGCCATAGTTAGATCTGTGATCCGATTCCAGAAGCAAATCAGAAGAGCTCATGATTGTCTGGTCAGGTATACGATATCTCAGGCAACACATATCACATCTTTGTCACCACTAGCAAAATGTACCAATTTAATTGAAGATTTTCATTTCCATGTGGAAAACGATGATAAATCATGGATCAATGATGGCGTTGTGAAATCTTCAGAAATTACAAATACAGCGTCACACTTAGAAACCGATGGAGATACGAATGTACAAAAACCATACGTGAATGCGACAGATTTCGTTAAGGATAGTGAAACTCAACCAGTCTTTATCAAAATTGAAGATAATGATTATGATTTTGGTGAACATTTTTATGAgaatgaaaataatgaatatcCTGGGGATAAGGACGGAGTGGTAGAATCAAAAATAGATAATTTAAATGCAATAGTGACTAGTAAAAGAACGAAAAGCAAgaagaagaaaagaaagaaagaggaATACGACGCGTCTGACGACGAGCCGCTGAAACCTAGCAAGAAGGAAAGAAAGGCGAGggcgaaaaaaaaagaaacagacGATAAGGCTGTGGTCAAACGGCGCGGCAAGCGGGAGAAGCCAGCGGGCGTGGTGACCAACCCTCGGGTCAGCAGGAACCTGGAGAGGCTCAACGTGCTGGACGGACAGATCGAGATGGTGGTGCTCAGCTGGGAGGAGgtagaaGCCGAGCGCCAAAAGGCTCTCTCGAGCGTGGTGTTCACTCGCCACGAGTACCGCTGCTACCACTGCGTGGTGGGCTTCAACCACCGAGTGAAGTTAGACAACCACATGAAGAAACATGATCCCGGCGCCGGCGCGGCGGAGTGCTCGGTGTGCCGCGTGCGCTGCCGCGACGACCACGCCCTGGTCGCTCACAAGCGGCGACATCGCGTCAGATGGCGCTGCGTGCAGTGCGGCGAGGCGAGCTCCCGCGCCGCCGTGGCCGCCGAccacgccgcgcgcgcgcacggCGCCGCGCCCGTGCACACCTGCCGCCGCTGCGGCCTCGCGCACCAATCCCTGGCCAAGCTACGGAACCACATGAAGAACCACGGGGAAAGGCAGAAGTGTGAGCTCTGCGGGAAAACATTCCGGGACCGGACGTCGCTCCGGACCCACCTGTTcATTCACCGTGGCGAGAAGGAATACTCGTGCGAGCACTGCGGCAAGCGTTTCCTGTTCAAGAAGGCGCTCGAGGTGCACCTCGTCACGCatgctgcgcccgcgccgctctaCTGCCTCGAgTGCGACATGACCTTCAAGAATCGAATGTCGTATTACCAgcacaaaaaatacaatttgaaaCATGTCGACCCGGCAAAATTAAAGTACAAGTGTCCGCTCTGTGACAAGCGATTCCTGAAAGCCTTTCGTTTGGAGGAGCACAACTTCGCTGTGCATCTGAAGGTCACGCCAATCTGCTGCACTGTGCCAGGGTGCGATATCtCGTGCTCGTCGCGCGCGGCGCTGCGCACGCACACGCGCGTGGTGCACCGGAacgcgcgcgcggcgcggaACCACGTGTGCGACACGTGCGGCAAGGCCTACACGacaAAGAAGACCCTGGAGGGGCACATGCGCAGCCACACGGGCGAGCGACCGTTCGGCTGCGCGCGCTGCGCCGCCACGTTCGCGTACTCCGCCGCGCTCTACAACCACAACAAGCTCGTGCACCGCCAGGGGAAGGTAGCCGCGCCGACCCACCCGCtgcattcataa
- Protein Sequence
- MDTQYNNTFLSYVCEGCLSSGRKLNAIYDVDYKRIFLNLLDSLDQVNQDLLLCWECTAIVRSVIRFQKQIRRAHDCLVRYTISQATHITSLSPLAKCTNLIEDFHFHVENDDKSWINDGVVKSSEITNTASHLETDGDTNVQKPYVNATDFVKDSETQPVFIKIEDNDYDFGEHFYENENNEYPGDKDGVVESKIDNLNAIVTSKRTKSKKKKRKKEEYDASDDEPLKPSKKERKARAKKKETDDKAVVKRRGKREKPAGVVTNPRVSRNLERLNVLDGQIEMVVLSWEEVEAERQKALSSVVFTRHEYRCYHCVVGFNHRVKLDNHMKKHDPGAGAAECSVCRVRCRDDHALVAHKRRHRVRWRCVQCGEASSRAAVAADHAARAHGAAPVHTCRRCGLAHQSLAKLRNHMKNHGERQKCELCGKTFRDRTSLRTHLFIHRGEKEYSCEHCGKRFLFKKALEVHLVTHAAPAPLYCLECDMTFKNRMSYYQHKKYNLKHVDPAKLKYKCPLCDKRFLKAFRLEEHNFAVHLKVTPICCTVPGCDISCSSRAALRTHTRVVHRNARAARNHVCDTCGKAYTTKKTLEGHMRSHTGERPFGCARCAATFAYSAALYNHNKLVHRQGKVAAPTHPLHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00010572;
- 90% Identity
- -
- 80% Identity
- -