Ahol039664.1
Basic Information
- Insect
- Acleris holmiana
- Gene Symbol
- -
- Assembly
- GCA_949316455.1
- Location
- OX438790.1:8021354-8041248[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.1 3.6e+02 3.2 0.0 1 21 358 378 358 383 0.89 2 10 0.053 6.2 8.7 0.2 1 23 501 523 501 523 0.98 3 10 0.047 5.5 8.9 2.4 1 23 530 552 530 552 0.95 4 10 4.8 5.6e+02 2.6 1.8 1 21 556 576 556 577 0.91 5 10 3.1e-06 0.00036 22.0 0.4 2 23 585 607 585 607 0.95 6 10 0.52 61 5.6 4.4 1 23 614 636 614 636 0.94 7 10 2.4e-06 0.00028 22.4 0.2 1 23 642 664 642 664 0.97 8 10 9.7e-05 0.011 17.3 0.9 1 20 670 689 670 691 0.94 9 10 0.0056 0.66 11.8 5.2 1 23 701 724 701 724 0.95 10 10 0.019 2.2 10.1 0.7 3 23 730 751 729 751 0.94
Sequence Information
- Coding Sequence
- ATGAGCACTGTTGAAAATGATGGACGCAAGTTGATAGCCTGTCAGTTGTGTCGGGTGATGGTCGCTTCGATAACGGAGCACGAGGGCAGCGCCCGGCACCAGGCGGCACGGCAGCTCGCCGCGGCAGCCCTAGACCGCCTGAGGGCCCATTTAGCCCCCCGAACCACCCTTAGGGATGACGTAACTGCCAACCTGATAGCTGCAGAATTGAACCCAGACATAAACCAAGTGTTTTGCGGCGCGTGCTCCTCAAATATTCCAGTTTCGGAAAAGAATCACTGGCGGTGTAAAGCGCACCTAATGGACGCCTTAAATGAACAAATCTTGGACGAATTGGTACGGGAGTATGTTGAGGACGAGGACCTACCCCTTATGGGGGCACCTTCCAAAGATCCAAGCGATGTGGAAACTGGGAAGGTTGTCGGGAACTGTGAGGTGGtcgaaaaatataaatgttacctGTGCGACGTACTAATACCTACAGTGTTTCGCACCGAACATGAACTTAGCGTGCGTCACCGTGCTAACCTAGCGTGCGCCAACGCCGCATCCAGACGCATAAGAGCACACCTAGTGCCAACTGGAACGACCATCCTCCCTCCTGAAACATCTATAGCCGACAAAATAACACCCTTACTAAAGGTGTACGTGAAACATGACATGAAAGATAAACCAGAAATGTTTTtagaaaacaaagaaaaagcCAAAGAGACAGGAACTGTAGCAAAGGCAACTGCTGAAACCCGTCTGACTGCCAAAAAGTATTTCACAGAAGTACAAAAGCACCTCCATAAAATTGGGGACTTTTATGGAATTGTTATAGACGATACTGAGTATGTCACTGTGAAATCTGGTAAAAATACTTTGAACGTTCACGTGGCGGATTTCAATGGAGTTTATTATGTGGGAGACCAAATGAAATGTAGGATGTGCGATCATAACAACTTCCATGTGTCCTACAGCTCTGGGAAACAACACGATAAGATCCACGTCATGAGTTTAGGACATATCGCTCGTATGTTGACTCCTATTAATAATGTGCATGGAATTAGGAAGATTGACAACACACATTATTTCTGCATTATTTGCAACGTCTCTTTGCCGTCTAGTGATGCCGTGAAGAAGCACATTGCGTCGGATATTGAGCATACAGCGCTCCTACCCGAGGCTTTGGAACGAGGAAACGCTTTTAAAGAAAGCAAAGACGACCTGAAAATTACGTTTTACGGTCAAGGAACAAATGAATCAATAGAGGACATAGACATTGATACGGTTAAAATAGAAAGTGTGGAAGTGGACATCCCAGACAATGATGACAGAGTTGACATGCACGATGAGAGAGATAACGATATTAAAGTAGAAAAATCCAGGAAGGGGGTGAATCCAAAGTTATATGCCAAATGTGAGGAGAATAACTTTGATTTGAAAGTCTTGACTTTTGAAGAGCAAATGGTGGAATTGGAGGAGAAAAAAAAGGCTGATAAGTATTtgagcaaaaaatataaatgtgagTTGTGCGCCATTGGATTTGTAACAAAGGATGTGTATGAGGAACACAATAAGAGACATCAAGAGTCCCACAGCCCACACGAGTGCTCCCTATGCCACCTGCGCTTTACGACCTCGCTGGTGCTCTCGCAGCACCTCCTGGCGCACGCGCGCAGGTTCCGCTGCCGGCTGTGCGGCGCGGCGGTGTGCCGCGTCAGCGACTGCGAGCGACACCGGCTCAAGTGCGGCAGCGCCGCGCCCGGCGTGTGTCCGCACTGCAATAAGATATTCAGTAACCAGGGCTCCTTGGAGCAGCACGTGAGAGGCGTGCACTACAAGAAAGAGAAGAAATTCGTGTGTTCCTACTGCAACCAGCGGTTCCAGAGCAAGCAGCGGCACGCCATACATACCAGAACCCATACGGGCGATAAACCTTACCGCTGCGACATCTGCGACCGCTCGTTCGCGGCCAACTCCAACTTGCGGAACCACCTGTCGGCCCATGAGCAAGCGAGACCGCACTACTGCGTGGAGTGCGACAAGTCGTACAAGACGCGCAAAGGGCTGAGGCGCCATCTGTTGGAGGGCGCTATGCATCTCGGGAAgtctgtTCATTCTTGCCACCACTGCCTGAAGAACTTTACCTCGGAGAAACTCCTCGCCTCCCACATTAGCGTGACACACACCAAGGATAACGCTTGTACTCCGTGCAATAAGAGTTTTGAATCGAACGCGATTTTGAAGAAACACCGAAAAACCGACCATGAAGCGCCTGAAGAGCGCGTGTTGCGAGGTCATAGAGCGACCGAACCGACGACTGCGCGCACGCACGTCAGCGACGAGCCCCCTCGCGCCCTCTTTGCTCACGCGCAGGCTGCGCAACAAGCGCTTTAA
- Protein Sequence
- MSTVENDGRKLIACQLCRVMVASITEHEGSARHQAARQLAAAALDRLRAHLAPRTTLRDDVTANLIAAELNPDINQVFCGACSSNIPVSEKNHWRCKAHLMDALNEQILDELVREYVEDEDLPLMGAPSKDPSDVETGKVVGNCEVVEKYKCYLCDVLIPTVFRTEHELSVRHRANLACANAASRRIRAHLVPTGTTILPPETSIADKITPLLKVYVKHDMKDKPEMFLENKEKAKETGTVAKATAETRLTAKKYFTEVQKHLHKIGDFYGIVIDDTEYVTVKSGKNTLNVHVADFNGVYYVGDQMKCRMCDHNNFHVSYSSGKQHDKIHVMSLGHIARMLTPINNVHGIRKIDNTHYFCIICNVSLPSSDAVKKHIASDIEHTALLPEALERGNAFKESKDDLKITFYGQGTNESIEDIDIDTVKIESVEVDIPDNDDRVDMHDERDNDIKVEKSRKGVNPKLYAKCEENNFDLKVLTFEEQMVELEEKKKADKYLSKKYKCELCAIGFVTKDVYEEHNKRHQESHSPHECSLCHLRFTTSLVLSQHLLAHARRFRCRLCGAAVCRVSDCERHRLKCGSAAPGVCPHCNKIFSNQGSLEQHVRGVHYKKEKKFVCSYCNQRFQSKQRHAIHTRTHTGDKPYRCDICDRSFAANSNLRNHLSAHEQARPHYCVECDKSYKTRKGLRRHLLEGAMHLGKSVHSCHHCLKNFTSEKLLASHISVTHTKDNACTPCNKSFESNAILKKHRKTDHEAPEERVLRGHRATEPTTARTHVSDEPPRALFAHAQAAQQAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -