Basic Information

Insect: Acleris holmiana
Gene Symbol: -
Assembly: GCA_949316455.1
Location: OX438786.1:8072860-8083098[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.9 5.7e+02 2.5 4.8 1 23 248 270 248 270 0.97

2 9 1.2 1.4e+02 4.4 0.0 2 23 292 312 291 312 0.84

3 9 0.00024 0.028 16.1 1.4 1 23 320 342 320 342 0.98

4 9 0.0078 0.92 11.3 0.1 1 23 361 384 361 384 0.96

5 9 0.00043 0.05 15.3 0.7 2 23 395 416 394 416 0.96

6 9 0.00087 0.1 14.4 1.4 1 23 422 444 422 444 0.95

7 9 8.5e-05 0.0099 17.5 2.3 3 23 452 472 451 472 0.97

8 9 2.9e-06 0.00034 22.1 2.9 1 23 478 500 478 500 0.97

9 9 0.0033 0.39 12.5 0.0 1 22 506 527 506 527 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.9	5.7e+02	2.5	4.8	1	23	248	270	248	270	0.97
2	9	1.2	1.4e+02	4.4	0.0	2	23	292	312	291	312	0.84
3	9	0.00024	0.028	16.1	1.4	1	23	320	342	320	342	0.98
4	9	0.0078	0.92	11.3	0.1	1	23	361	384	361	384	0.96
5	9	0.00043	0.05	15.3	0.7	2	23	395	416	394	416	0.96
6	9	0.00087	0.1	14.4	1.4	1	23	422	444	422	444	0.95
7	9	8.5e-05	0.0099	17.5	2.3	3	23	452	472	451	472	0.97
8	9	2.9e-06	0.00034	22.1	2.9	1	23	478	500	478	500	0.97
9	9	0.0033	0.39	12.5	0.0	1	22	506	527	506	527	0.96

Sequence Information

Coding Sequence: atggatCATATATGTCGATTATGTTGCTCTACGAAATTCGTTAACAACCACATATTTGATGAGGAGAACGCCTTGTACTTAAAAATGTCATACTTGCCGATAAAGGTTCTGCGAGGGGACCAGCTGCCGCAGCGCGTGTGCGACCGCTGCAGCTGTCGTGTGAACGACCTTTACCAATTTTGCAACGAATCCATCGAGGTTCAGCACAGATTACGCAGTATCTTTCTTTCGTCCGAGCTCCACAGAGACCACTCCTCTGATCTACCTATAATCAAGGATAATGTCTACTCCCCACAAGGCCCAGCACAGTGCGAGCGCTCCACACAAACTGAGTCTCTGGATAACTGCACTAGTAAACCACAACCTGAAGTCAAGGAGGAAACAAAGCTGTTTTCACCAACTACAGTCAAAACAGAAGACAACACAGACTATTATGTTTATGATAACATTTGTCAGGATGTTCCTTCGGACAATAGCGATGATATATCACTCATTGatctcaaaaagaagaagaatatagGTGTAAAGCCTGAGGTGAATGGGGTGACAGAGAACAAGAGAGGACGCCGGAGAAAGAAAGATTTGAAGGATTGGAAGTTATTGATGAAAGCACTGCCTAGTGTCGCGCTACTGGCCAGTCAGTCAATTGACCCGGTCAAGATGGAGCTTCAGCCAACATCGGTGCCGGTGTATGATGCTCGGCACTTGCAGGTCAAGCAAGAGCCCACTGAACCAGACAAATATGACTGTTGTATCTGCTTTGTTCAGTGTTACAGTCGTGGAGAGATGTTGCAACATTacagGCAGCACGGCGCGGAGGTCGAGCAGCCGCGGCCGCCGGCGCCCGAGGCGCCGCCCGAACTGCGCCCGCTAAGGTGTCCTCGGTGCAACAAGGTGCTAGAGCCTGCCGCGTGGGCGGCGCACTGGCTGCGGCACTGGGAGCGTGACCGGCGCCCTTACCGCTGCGCGCGCTGCGAGAAGACCTTTAGCGACCCCCACCAGATACTTAAGCACGGGCTGACGCATAAGAACGACTCCGAAGGCCCGCTGGCGGGCGCGGAGGGCACGCCTGGGAAGCGGTTCGTCTGCGACCTTTGTCCCGAAGGATTTGTTTACATGAGGTACCTGCTGGCGCACCGCACGCGCGCGCACCCggaggcggcggcgcgcgcgctggcgcTGCGCTGCGCGGAGTGCGCGCGGGAGTTCGCGCACCTCAACTCGCTGCGCCGCCACCTGCGCGCGCACTCCGGCGAGCGGAACTTCCTCTGCTCCGTCTGCGGCAAGGCGCTCTCCTCGCGCGAGCACCTCAAGTTCCATCTCAGGATACACGCCGGGTACAAGCCTAATATTTGCAAGACATGCGGCAAAGGGTTCGTCAAGAAATGCAACCTAACGCTTCACGAGCGCGTCCATTCTGGGGAGAAACCGCACGTGTGCTCCCACTGCGGCAAAGCCTTCAGCCAGCGGTCGACCCTGGTCATCCACGAGCGGTACCACAGCGGAGCCCGGCCGTACGTCTGCGGGCTGTGCGGCCGGGGCTTCGTGGCCAAGGGGCTGCTCTCCATGCACCTCAAGACCACGTGCATCTAG
Protein Sequence: MDHICRLCCSTKFVNNHIFDEENALYLKMSYLPIKVLRGDQLPQRVCDRCSCRVNDLYQFCNESIEVQHRLRSIFLSSELHRDHSSDLPIIKDNVYSPQGPAQCERSTQTESLDNCTSKPQPEVKEETKLFSPTTVKTEDNTDYYVYDNICQDVPSDNSDDISLIDLKKKKNIGVKPEVNGVTENKRGRRRKKDLKDWKLLMKALPSVALLASQSIDPVKMELQPTSVPVYDARHLQVKQEPTEPDKYDCCICFVQCYSRGEMLQHYRQHGAEVEQPRPPAPEAPPELRPLRCPRCNKVLEPAAWAAHWLRHWERDRRPYRCARCEKTFSDPHQILKHGLTHKNDSEGPLAGAEGTPGKRFVCDLCPEGFVYMRYLLAHRTRAHPEAAARALALRCAECAREFAHLNSLRRHLRAHSGERNFLCSVCGKALSSREHLKFHLRIHAGYKPNICKTCGKGFVKKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVIHERYHSGARPYVCGLCGRGFVAKGLLSMHLKTTCI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00010623;
90% Identity: iTF_00010623;
80% Identity: -