Ahol035158.1
Basic Information
- Insect
- Acleris holmiana
- Gene Symbol
- -
- Assembly
- GCA_949316455.1
- Location
- OX438784.1:11998535-12016192[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0055 0.64 11.8 3.5 1 23 280 302 280 302 0.98 2 11 0.073 8.6 8.3 4.8 1 23 310 333 310 333 0.94 3 11 5.5 6.5e+02 2.4 0.4 1 18 337 354 337 362 0.68 4 11 0.00023 0.027 16.1 1.9 1 23 435 457 435 457 0.99 5 11 0.0013 0.15 13.8 1.8 1 23 465 488 465 488 0.97 6 11 1.7 2e+02 4.0 3.0 1 23 492 514 492 514 0.97 7 11 1.8e-05 0.0021 19.7 2.5 1 23 519 542 519 542 0.98 8 11 1 1.2e+02 4.7 1.7 3 21 548 566 547 569 0.80 9 11 3.4e-06 0.0004 21.9 1.3 1 23 686 708 686 708 0.98 10 11 5.2e-05 0.0061 18.2 0.8 1 23 714 736 714 736 0.97 11 11 2.4e-05 0.0028 19.2 2.7 1 23 742 765 742 765 0.98
Sequence Information
- Coding Sequence
- ATGTTAGAGCTAAAAGCTTGTACGGCGTGTTTTAGCACGGATGTTAAGCTGTATAATATGGACTCTAATTCACTACGGCAGGAATACAACTTGGTATCTGGATTTAAGACGGCGCAGTGTGTTGGGATGCCTAATTATTTATGCGTTGAATGCTCAACGTTCGTAAGAAAATACGTAAAGTTCAGAAGAAAATGTCAACGGGCTCATTTTACTTTGCAAGAAATCTTGCAAAGGAGTAAAGAGATTACACTGTCTAAACTCAAGGCTATAGACCGTGAATGCTTAGACATAATGCCGGTGCTATCAATAAtagatgtaaacaaaataaattatgaggAAGTTGAGTACCAGTGGATGAAAACTAGCCGTCTCGCTTTCTACAATGGTGATGAAATACCTATCATTCACCACAGCACCTATGATAGCCTAGTAATAAATATCCCTAAAACTAAACAAAGTTCTGAACTAGATGAAAAGTTCATTAAAGCAGAAGATGATGCTACAGGTACAAGTGACAAATTTGTAGCTCCAACGGCTGGGCAGCTAGACTTAGAACACTCAATATCAATAGTCAGAGATGGTGAGGATATGGATGATTTTgacaatgatgatgataatcATAGTGATGAGTCTGATCATTTCCCCTCGGAAGCGCCTCTTGAAACTGTGACCCCGCAACCAAGACCCCGTAAGGCATTTAATGAAATAGGTAAATGTAAACGTAAGAAGTTTGTGCCGGGGTCTTCATTGGATGAAGAGTATGCAAGTTTAGTGGCCATATCAGAACAAGAGGCTCAGGCTGCCGTGGAGGTGTATCGGTTGTTCAGCCATGGAAATTTTCGTTGTAAAGAGTGCAATAAAGGATATCATACTCAACTGAGGCTGACTGCACATTCACGGATGCACAATCAGCATGTGAGTGGGAACTTCTACTGCAAACTGTGCCACTACTACTACAAGACAGATTATCTGCTCAAGACCCACATAACAGAAAAACACACCTACAAATATGAATGTAAGAAGTGCCCTGAAGTAAATTTTGATCGCACTTCAGCTAAACAACACTTCATTTGGAGGCACCTTCAAAGCCGCAAGGAAAAAGGAGCCAACTGGTACGAGTCTCGACCAAAATGGTTGAGTTCCAAGGGAGGCAAGCGGGTCAAGGGTGTGGTCACCATCCGCCCCGTCCGTAAGATCACCAAACTGCCTCCTGACTTTCCCACATACTCTCCGGTTGGCCACGAGGAGCAATATGACCTTATCCTGGAACGGAAGAAGTCCAGAAACTATATGGAAGCGGAGTACAAATGCGAGTTTTGCTATAGAGGGTTCAGGGCTGCTGCTACGTATAATAAGCATATGAGGAAACATGATCCGGAGTACGCGGGCCAGTTCCAGTGCGACATGTGTAAGCTGTACTTTAAGAGCCCGCGCAAAGTGTATCGGCACATGAACATCACGCACCTGTTCAAGTACTCCTGCCAGATGTGCAAGTTCGTCTCCTTCAACAAAGGTCAAGCGCATATGCACTATCGCTGGCATAAAAACGTCACTTACCAGTGCCCGCACTGTGATAAGGAATTCAAGAAAGCATCGACGCGGCTGACGCACATACGGATCAAGCACCCGTCCACGAACATCTGCAACCTGTGCGGCCACAGCTTCGTCAGCGAGAACGGGCTGTACTGCCACAAGCAGCTGGCGCACTCTGTTGAGgAGCGAGACATCATGGAGCGCAGTGTGACCGACCAGAGCGACCCGCTGTACTGCGCAGATTGTGACGTGCAGTTCCTCAACGAACCCGCTTTCGCCACGCACTTGGGCAGCTCCAACAAGCACGCCACCACCAACCTCTCCATCGCGAAGGTcccgcggcgcggcgcggcgggccggcggcgcgggcggccgcGCTCGGGGCTGTGCCGCTCCGAGGTGCTCAACAACGGGACCGTCACCGCCACCAGCTGCGACCTGTGTTCGGAGCACCTGTCGAACGACGTGCAGGCGCGCAAGCACTACGCCGAGCAGCACCCCGGCGCGGAGTTCCTCAAGCGGTACATGTGCGACGTCTGCGGGCACACCACCAAGCAATACGCGAACCTCATGGTGCACATGCGCACGCACACTAACGAGAAGCCGTACGAGTGCCCGCACTGCGACCGCCGGTTCAGCATGCCCAGCAACCGCGACCGGCACCTCGTGGTCCACACAGGCGAGAAGCGCTACCAATGCCAACACTGCAACCGTCGCTTCACCCAGTCTACTGCTGTTAAGTTGCACATACAAACCGTCCACCTGAAGATACCGTACAAGCCGTGGGAGAAGAAGAACAGGAAGCGGCGCAAGGAGGAGCCCGCGCTGGGGCCCGCGGCGCCCGCGGCCGCGCCGCCGCACAAGCTGCTGCTCGACCAGGGGGACTACTTGAACGCCTTCATTACTTACAATGATGAGTGA
- Protein Sequence
- MLELKACTACFSTDVKLYNMDSNSLRQEYNLVSGFKTAQCVGMPNYLCVECSTFVRKYVKFRRKCQRAHFTLQEILQRSKEITLSKLKAIDRECLDIMPVLSIIDVNKINYEEVEYQWMKTSRLAFYNGDEIPIIHHSTYDSLVINIPKTKQSSELDEKFIKAEDDATGTSDKFVAPTAGQLDLEHSISIVRDGEDMDDFDNDDDNHSDESDHFPSEAPLETVTPQPRPRKAFNEIGKCKRKKFVPGSSLDEEYASLVAISEQEAQAAVEVYRLFSHGNFRCKECNKGYHTQLRLTAHSRMHNQHVSGNFYCKLCHYYYKTDYLLKTHITEKHTYKYECKKCPEVNFDRTSAKQHFIWRHLQSRKEKGANWYESRPKWLSSKGGKRVKGVVTIRPVRKITKLPPDFPTYSPVGHEEQYDLILERKKSRNYMEAEYKCEFCYRGFRAAATYNKHMRKHDPEYAGQFQCDMCKLYFKSPRKVYRHMNITHLFKYSCQMCKFVSFNKGQAHMHYRWHKNVTYQCPHCDKEFKKASTRLTHIRIKHPSTNICNLCGHSFVSENGLYCHKQLAHSVEERDIMERSVTDQSDPLYCADCDVQFLNEPAFATHLGSSNKHATTNLSIAKVPRRGAAGRRRGRPRSGLCRSEVLNNGTVTATSCDLCSEHLSNDVQARKHYAEQHPGAEFLKRYMCDVCGHTTKQYANLMVHMRTHTNEKPYECPHCDRRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSTAVKLHIQTVHLKIPYKPWEKKNRKRRKEEPALGPAAPAAAPPHKLLLDQGDYLNAFITYNDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01464509;
- 90% Identity
- -
- 80% Identity
- -