Ahol037175.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acleris holmiana
Gene Symbol
-
Assembly
GCA_949316455.1
Location
OX438787.1:11793469-11796127[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 9.3 1.1e+03 1.7 0.3 1 23 196 219 196 219 0.84
2 16 0.00046 0.054 15.2 0.5 2 23 225 246 224 246 0.97
3 16 0.00088 0.1 14.3 0.2 2 23 277 299 276 299 0.96
4 16 0.00016 0.019 16.6 0.3 1 23 389 412 389 412 0.93
5 16 0.89 1e+02 4.9 0.9 1 13 416 427 416 436 0.75
6 16 0.00056 0.065 15.0 1.1 1 23 444 467 444 467 0.97
7 16 0.00091 0.11 14.3 1.0 1 23 472 495 472 495 0.94
8 16 1.5e-05 0.0018 19.9 0.6 3 23 509 529 507 529 0.97
9 16 0.00068 0.079 14.7 1.9 1 23 535 557 535 557 0.98
10 16 0.0001 0.012 17.3 3.4 1 23 596 618 596 618 0.98
11 16 0.3 36 6.3 0.1 2 23 623 643 622 643 0.93
12 16 0.29 34 6.4 0.3 1 23 659 681 659 682 0.92
13 16 0.00037 0.043 15.5 1.5 1 23 688 710 688 710 0.98
14 16 0.12 14 7.6 6.2 1 23 716 738 716 738 0.97
15 16 0.00037 0.043 15.5 0.2 1 23 744 767 744 767 0.96
16 16 0.022 2.5 10.0 0.4 3 23 774 795 772 795 0.95

Sequence Information

Coding Sequence
ATGGAAGTATCAACGGAACCAGAAAGTGAAGGTGCAGAGATAATCATAACCACCACCACCgaggaatatgacgagtttgaCTTCATTAGAGAGAACTTAAAACAAGTGTTATATGTACCACAGTTCTGTGGCATCTGCCTCAAAGTCAGTGATGATTTATGTAGCATAGAGGCAGAGTTTAAAGTTATGACGTGTCGAATGGCTGATGCAAAGGCTTTAAAAGATGTGCTAGGTTATGTTTTTAACAATCAGGGTCAAGAAGTCCTAGCCAGTGGATATGTTTGCAACTTGTGTATTGACAAGGTATTGGAATCGTACATCTTCATATACAACACCAGAGAGTCatccaaaattataaataacttcaTAAATGAACTAAATTTCAAAACGGTTAATGCTATTGAGCAGTTAACTGAAACTAATAACTATGAAAACTCTGAAGTTGTCattatattagaaaataatgacGATTACTATACTCTAGATGTGCAAAAGGAAGTGGACACAACAACAAGTAACATTGCGAAATcagttacagttaaaaagaaaaaaaaaccgggtaagaatTACAAAAAGCATACTGGTTACCGTTGTGTAGAATGCAACATCATAGTATTAACTTATAAAGAATGGAAACAGCATGAAAGGGATTATCATGAAAAACCTCAAATCGAGTGTCAGATATGTAACAAGGTACTTAGCAGTGACCAGAGTCTGACAACTCACTACAAGACACACGCTATGGTGAAATGTAAGATTTGCCATCTGTTGGTTCCTGATCATGATTTGAATGACCACTTTAGAACTCACCATGAGAATGATAAACAAAAATGCCCTATATGCTATCaagatttttacacaaataGTGAAATCAATGCTCATTTGAAAATAAGTCATCCTGAGGAAGACAATGATCAAAATAAATCGCGATGCATGTTGTGTTTAAAGCATTTTGATGGAGATGAACTCAATGAGCATAGATGCAAATTCCGTTGCTCTGAATGCTCAGAAATACCCTGCATTCACcataagtatttaatattttacagaGACCAAATAAGGGCAAGAGCGTCTAAGATAAAATGTATCGATTGCGACTATTACTGTCACAAAAAGGACATTTTAGTTGGACATGCTAACAGGGAACATTTAAACCATATACCCTTTGCTTGCGATATCTGTGGACAGCGCTTTTACTCCAAAATTGGTCTTAAAGCTCACATTTATCAGTTCCACACTGAAAACCATGTATGCGAGTACTGTGACCAAGAATTTAAAGGCACTTCTTTTGAAAATCATAAAAGCACTTGTGCTTCAGTTGAAAGGGAATTTCGATGCAACAACTGCCCAGCATCTTTTGACAGCTCCAAATACCTTGATAACCACGTGAAGAGGAGGCATATACAGGAGGTTTATCCATGTAACTTgtgcaataaaacatttttaactaaTAGCAAATTAAAAGAGCATACTGTTAAGGTGCATAATGGCTTGCAAAATAGAAATAGAAGGTCATTTACAGATTGCGCTATTTGTGAGAAAAAGTTTGATACGAGAGGCGATTTGAGGCGCCATGTTAAAACACATGGTCCGAACTCTAAATTCCCCTGCAGAATTTGTAACATTGAATTTGATTCTTTGAAGCAACTGCACGTCCATAGGAGGAAACACGTGAAGTCTTACTGTGAGCGCGTCCAATGCCCCGTTTGTAACGTGGAATTAAAGTCTGCATGTTTGCCACAACACATGTTAAGGCATGCAGTGGAGTCCGGTGAAGCACCAGCATATCGTTGTGATATATGTGGAAGGTCATGCTCCTCCAAAGTTTATTTAAGATACCATAAGCTAAGCCATATGGAGCCAATACCTTGCCCAGAATGTAAAAAACTTATCAAACCTGCTGGCCTtcaaaaacatcttaaataccATGGGTATAAAGATGATCCAGTGATGAGGGAGAAAATGAAacgtaaatataaatgtaacCTATGCGATTATTTTGCATCAGATCCTAGTATTATAGAAGCCCATGCTAACCGACACCACTTTAAAGTGAAACCCTACGTTTGCTCGGTTTGCGAAAAAGATTTCTGCGGCAAACTTCAGCTGAGTAGGCATTTGGAAACTCATGACTCAACCAAAAGCTTCCACTGCGAGATATGTCAAAAGAaatttttaagtaaagtttGTCTACGAATGCATACAAGACTGCATACGGGAGAGCGTCCTTATTATTGCGAAGTTTGCGCGGAAAGTTTCATTTCAGCTAGTGCCTTAAAAACGCATAAGATTAAACGCCATGCAGAAAAATCTATAGCCTGCCCGTTCTGTAACAGGATGTTTTACCTAGCGGGGGAAATGAGACAACATTTCAAGAAGTACCATTGGCCGCATAAAGACAGGAAGTTTGACCATACAGAAGTCGAGGGATTGGGCAGAGAGTTTTATCATTTGTTTGAAGATGGCCGGAGGCCAAGGTTGGATGACGATGACGTTGCTAGCAATATTATCATTGAAGAAATTGTTGAATAA
Protein Sequence
MEVSTEPESEGAEIIITTTTEEYDEFDFIRENLKQVLYVPQFCGICLKVSDDLCSIEAEFKVMTCRMADAKALKDVLGYVFNNQGQEVLASGYVCNLCIDKVLESYIFIYNTRESSKIINNFINELNFKTVNAIEQLTETNNYENSEVVIILENNDDYYTLDVQKEVDTTTSNIAKSVTVKKKKKPGKNYKKHTGYRCVECNIIVLTYKEWKQHERDYHEKPQIECQICNKVLSSDQSLTTHYKTHAMVKCKICHLLVPDHDLNDHFRTHHENDKQKCPICYQDFYTNSEINAHLKISHPEEDNDQNKSRCMLCLKHFDGDELNEHRCKFRCSECSEIPCIHHKYLIFYRDQIRARASKIKCIDCDYYCHKKDILVGHANREHLNHIPFACDICGQRFYSKIGLKAHIYQFHTENHVCEYCDQEFKGTSFENHKSTCASVEREFRCNNCPASFDSSKYLDNHVKRRHIQEVYPCNLCNKTFLTNSKLKEHTVKVHNGLQNRNRRSFTDCAICEKKFDTRGDLRRHVKTHGPNSKFPCRICNIEFDSLKQLHVHRRKHVKSYCERVQCPVCNVELKSACLPQHMLRHAVESGEAPAYRCDICGRSCSSKVYLRYHKLSHMEPIPCPECKKLIKPAGLQKHLKYHGYKDDPVMREKMKRKYKCNLCDYFASDPSIIEAHANRHHFKVKPYVCSVCEKDFCGKLQLSRHLETHDSTKSFHCEICQKKFLSKVCLRMHTRLHTGERPYYCEVCAESFISASALKTHKIKRHAEKSIACPFCNRMFYLAGEMRQHFKKYHWPHKDRKFDHTEVEGLGREFYHLFEDGRRPRLDDDDVASNIIIEEIVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010502;
90% Identity
-
80% Identity
-