Basic Information

Insect: Acleris holmiana
Gene Symbol: -
Assembly: GCA_949316455.1
Location: OX438786.1:11845836-11871788[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.018 2.1 10.2 6.1 1 23 191 213 191 213 0.97

2 10 3.7e-05 0.0043 18.7 0.4 1 23 245 268 245 268 0.93

3 10 0.0037 0.44 12.4 3.1 1 23 274 296 274 296 0.97

4 10 3.9e-06 0.00046 21.7 2.4 2 23 309 330 308 330 0.97

5 10 0.012 1.4 10.8 1.4 3 23 337 358 336 358 0.95

6 10 2.9e-05 0.0035 19.0 0.6 3 23 369 390 368 390 0.97

7 10 0.0014 0.16 13.7 1.8 1 23 397 420 397 420 0.94

8 10 0.028 3.3 9.6 0.7 5 21 431 447 428 450 0.87

9 10 0.0025 0.29 12.9 2.4 5 23 462 480 461 480 0.96

10 10 0.00011 0.013 17.2 0.5 1 23 485 508 485 508 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.018	2.1	10.2	6.1	1	23	191	213	191	213	0.97
2	10	3.7e-05	0.0043	18.7	0.4	1	23	245	268	245	268	0.93
3	10	0.0037	0.44	12.4	3.1	1	23	274	296	274	296	0.97
4	10	3.9e-06	0.00046	21.7	2.4	2	23	309	330	308	330	0.97
5	10	0.012	1.4	10.8	1.4	3	23	337	358	336	358	0.95
6	10	2.9e-05	0.0035	19.0	0.6	3	23	369	390	368	390	0.97
7	10	0.0014	0.16	13.7	1.8	1	23	397	420	397	420	0.94
8	10	0.028	3.3	9.6	0.7	5	21	431	447	428	450	0.87
9	10	0.0025	0.29	12.9	2.4	5	23	462	480	461	480	0.96
10	10	0.00011	0.013	17.2	0.5	1	23	485	508	485	508	0.95

Sequence Information

Coding Sequence: ATGGAAGTCAAAGAGGACGAGATTCCAGTTTTAGTTGAAATTAAGACTGAGCCAGAGGAATATGTGGACATCAAACAGGAACCACCAGAGGAGCCACCAGAGGAAGCGGTGCAAAATGAACATCCTGAAATTGAGACTGTAACAGTCAAAATTGAGCCAGTATACATAGAACatgTGGAGCACCATGGACCTGGCGAGATGGAAACATATGCAATATTACCAGATCTACCTAACAGGCCAGCAGTGAAACCAACAAGAAAGTACAAGAAAAGAAATAAGTGTGAATCAGATGAAGATTATGCCCCAGCAAAAGCTAAGAAAAAGGTTAAGGAGACTGTAAAGAAAACTTACACAACTAAAGCTAaaaAGCAAGAGAATAATTACACAGAAGAAGTCACACAGCATATAGAGGTTGTCACGATAACCGAAGAAGAGAGACAGAGGGAGTTTAAAGAGCTGTGGCACTCGCGGAAACATATGCGGTATACATGTGAGCTGTGCGCCATAGGATACGTGATGATGGATCCTTATACGTTGCATATGAAGTGTCATTCGTCGGAAGCTGGTGACCACGAGTGTGACATATGTCACTGCCGCGTGAAGACAGCTGACACGTTGTACCGCCATCGCTTACGTCACTTCCGCCGATACCGCTGCACCATCTGTCTCTCTCAGCACAAGGACAAGGAGACGGCGGCAAGCCATGTCATGAGCAGGCACTCCAAGCGGGCGTTCACCTGCACCGAGTGCGGCAGCGGGTTCAAGcgtccagcgtatttaaaaaaGCACGTAGCCCAGCAGCATACCAAAGCCGAGGTACACGAGTGCCCAGTCTGCCAGCGAGTGTTCTACGACAAGACCGGCTTACGGTGTCATGTGAGGAACCACGACTCGGAGGCGCGCAACGCGCCGGGCGTGAGCGTGGTGTGCGACACGTGCTCGCGGCGCTTCCGCAACAAGGCGCACCTGCGGCGCCACGTGCGCGtgcacgccgcgcgcgccgagGCCTGCGCGCACTGCGCCGCCACCTTCAAGACGCGCAAGGGGCTGCGCCTGCACCAGGAGTCCAAGCACCAGGACAAGGCGAGGTCGGAGCCGTCGGCGTGCCCGCTGTGCCCGCGCACGTGCACCAACCCCGTGCTGCTGCGCCAGCACATCCGCCGGATGCACTCCGACCGGACCAAGAAGTACCAGTGCGACCACTGCAAGCGGTTCTACTACAGCAAGGGCGAGGTGCGGTCGCACATCGCGTGGTCGCACGTGCGGCACGCGGGCAGCGTGCACGCGTGCGAGTGCGGGCGCGTGTTCCGCACGCGCACGCGCCTGCGCCAGCACGAGGACGCCGCGCACAAGCTGCTCGTGCCGCCGCGCAGCTACCTCTGCCACTGCGGGAAGGGGTTCACGAGTAAACAAGTGCTATCCCGCCACATGAAAGGCCACGAAGGGCTCACCTACCCATGCCCAGAATGCGGTCTCCGCTTCAAATCCGAATCCTACGTGAAAGTCCACTTCAAACTCCGACACCTCAACATGACCAGAGCCCAAATAAAAGCGGAAAAACAACCCAGAACACTGACCTACATATCAGGAAAGAAAATCTACCACAAAGGTATGAAGATAAATATTAAGGAGAACGAGATGGAGAAAGACATGGAGAAGTATGATGTCGAGAGGAGAGAGGTGCAAGTGAAAGAGGAGGATGTTAACGCTATTAGGGTGCCGCTGTTTGATTTTGTTGATCTAAAGCAGGAGCCGGAAGATTATTATGGTGATTAG
Protein Sequence: MEVKEDEIPVLVEIKTEPEEYVDIKQEPPEEPPEEAVQNEHPEIETVTVKIEPVYIEHVEHHGPGEMETYAILPDLPNRPAVKPTRKYKKRNKCESDEDYAPAKAKKKVKETVKKTYTTKAKKQENNYTEEVTQHIEVVTITEEERQREFKELWHSRKHMRYTCELCAIGYVMMDPYTLHMKCHSSEAGDHECDICHCRVKTADTLYRHRLRHFRRYRCTICLSQHKDKETAASHVMSRHSKRAFTCTECGSGFKRPAYLKKHVAQQHTKAEVHECPVCQRVFYDKTGLRCHVRNHDSEARNAPGVSVVCDTCSRRFRNKAHLRRHVRVHAARAEACAHCAATFKTRKGLRLHQESKHQDKARSEPSACPLCPRTCTNPVLLRQHIRRMHSDRTKKYQCDHCKRFYYSKGEVRSHIAWSHVRHAGSVHACECGRVFRTRTRLRQHEDAAHKLLVPPRSYLCHCGKGFTSKQVLSRHMKGHEGLTYPCPECGLRFKSESYVKVHFKLRHLNMTRAQIKAEKQPRTLTYISGKKIYHKGMKINIKENEMEKDMEKYDVERREVQVKEEDVNAIRVPLFDFVDLKQEPEDYYGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00010481;
90% Identity: iTF_00010481;
80% Identity: -