Basic Information

Insect: Acleris holmiana
Gene Symbol: -
Assembly: GCA_949316455.1
Location: OX438791.1:8029697-8042967[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0016 0.19 13.5 2.6 1 23 423 445 423 445 0.98

2 9 4.5e-06 0.00053 21.5 4.0 1 23 493 516 493 516 0.96

3 9 0.71 84 5.2 0.1 2 23 522 543 522 543 0.93

4 9 2.7e-05 0.0031 19.1 2.7 1 23 548 570 548 570 0.96

5 9 0.0083 0.97 11.3 2.5 3 21 577 595 576 597 0.96

6 9 1.5e-06 0.00018 23.0 1.5 1 23 606 628 606 628 0.99

7 9 6e-05 0.0071 18.0 0.8 1 23 634 657 634 657 0.94

8 9 0.001 0.12 14.1 0.6 1 23 663 686 663 686 0.92

9 9 0.11 13 7.7 1.8 1 23 694 717 694 717 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0016	0.19	13.5	2.6	1	23	423	445	423	445	0.98
2	9	4.5e-06	0.00053	21.5	4.0	1	23	493	516	493	516	0.96
3	9	0.71	84	5.2	0.1	2	23	522	543	522	543	0.93
4	9	2.7e-05	0.0031	19.1	2.7	1	23	548	570	548	570	0.96
5	9	0.0083	0.97	11.3	2.5	3	21	577	595	576	597	0.96
6	9	1.5e-06	0.00018	23.0	1.5	1	23	606	628	606	628	0.99
7	9	6e-05	0.0071	18.0	0.8	1	23	634	657	634	657	0.94
8	9	0.001	0.12	14.1	0.6	1	23	663	686	663	686	0.92
9	9	0.11	13	7.7	1.8	1	23	694	717	694	717	0.93

Sequence Information

Coding Sequence: ATGTTACATAACAGTGGGCCTTATGGGCCAAATGACGTGCCAATTAACATGGGAGTGCCTGTAAATAGGACACAAATATCAAATCCCGTTAGTATTGGGAATAACTTGAGTAATTTGGGTAAAATGCCTCCTCAAGTTCCTCAAGCGGCGCCTCCTCAATACAATATGCCGGATTACTCAACGTTTGGTCACCCTCCGTTAAATATGGGTCATCCCATAAGCCCGTTTGCCAATTATCAACCTATGAACTTCCAGACGAATTACGGACATCCAGGCGTTAATTTACCCCACGAATCAAGTTTAAATAACGTCCAAAACGGTATGTTACCTATGAATTTAAATATACAAAGTAATCACAGCCCTAATCTACTGAATTACCACAGTGATGACAATAAAAGAACTGATTTAAACAATTCAAACTTCAGAGATAATTACAGTCGAAAAATGCCTATAAACGTACCTGAAATTCACAAAGCCTTCCATAAAAATTTAGCTACGGAAAGTAGCTATAGCCAGTATACTTCTATACAGGAAAATCCATATTACCGTCAAGATTCATCTAAAACTCCGGAGAGAACTCTTTTGGACAGCAATAGGCGAAAAAGTCTTGAAAATACTGTGAAACTTATTGAAAATATTCTTAGTAATACTGCTAAGGAAAAATTAAGAAGTACAAATGTGGAATCGACAGGTAGACAAAATGTTATTATGAATGTCCCAACTGTTGAAAATCTTAAAAAGATAGGAGCGCATAAAACCTTTTCAGATCAAACTATAAACGACACGCCAAACACAAGTACTAATGacgaagaaataaaaaacatggtaACTAACACTAATAGTGCGGAAGTGGACCAAAGCAGAGATTCACATCTCATAAAAGCACTTAAAAGACCAATTAACACTAATCAGACTAATGAAGATTTACCAAATGGAGTTCAATCTGAACCACTAAATTGTCACTTGCTAAGCAGCACTAACGCAGAAACCAATAAAATACTGAGTGAAACCTCTGAAAATGATACAGATTCTAGTAGTGATACTCCTTTAATCAAGGAAGAGATTGTTGATGAAGAAACATCACACAATGTTAAGCTAGAATTAGTTACAACTTGGACAAGGTCTGTTAATGTGCAGCCGTTCTTGAGAGATACCAATGCAACGGACAGAGATGATGCGGGGAAGGATGCAGTAATCATAGCAGgagataataatattacacaAGCAATGGAAGCTGCAAAAAATGGTCATGTTCCGAACACATACTACGAATGCCCGCACTGCAATCTCCTCTTTAAGCATCCAAAGAGATTAATTATTCACACAAAATGGCACACTTTTGGTTTGACCAATGAGAAGAGACAGGAACTGGCAAAAGAGAAGGAAATCAGGAGGACTTTGAAGAGAGAAGCGAGAATTACAGAGAGGTTACACTTCAACGAGATGAAAAATAAGGAGGATGCGGAGGGAAACACTCACCCTTGCAAGGATTGCGACAAGGTGTTCAAAATGAAGAGCAGTCTTAAGAACCACAGGCAGCGGTACCACCCGACGCGCGTGCGCGAGTGCAAGATCTGCCACGCGTCCGTGGTGGGCTGGCTGGCGCTGCGCGAGCACGTCACGGCGCACGCGGGCGCCGCCCACGCCTGCCCCGACTGCCCCAAGCGGTTCAAGTACGCGCACTCGCTGGCCAAGCACAAGGACACGCATCTGGAAAAAACCCACGGTTGCGAGCAGTGTGAAAAGAAATTTGGATCTAAAGCGTTACTCAAAATGCATATGAAATGTCACGAGCGGACAGCGCGCGGCGCGACCTTCCGCTGCACGTACTGCGGGAAGGGCTTCTTCGAGAGCTACAACTTACAGGTACACGAACGCACACACAGAAACGAGCGTCCATTCCTATGCGACATATGTCAGTCGAGTTTCGGCACGAACTCTAGTCTCAAAAGGCATCTCAAGGTGTCGCACAGCTCGTTGAAGCCGTTCCCGTGCCCGACGTGCCAGCGGTGCTTCGCGACGGCGAGCACGCGCGCGCGGCACGGGGCGCGCGCGCACGGCGACCCCGCCGCGCTCCGCCACGCCTGCGCGCGCTGCCCGCGCCGCTACCGCGCGCACAAGGACCTCGCCAAGCACCGCGCGCGGGCCCACCCCGACCACGACCTCGACCACCAGATCTAG
Protein Sequence: MLHNSGPYGPNDVPINMGVPVNRTQISNPVSIGNNLSNLGKMPPQVPQAAPPQYNMPDYSTFGHPPLNMGHPISPFANYQPMNFQTNYGHPGVNLPHESSLNNVQNGMLPMNLNIQSNHSPNLLNYHSDDNKRTDLNNSNFRDNYSRKMPINVPEIHKAFHKNLATESSYSQYTSIQENPYYRQDSSKTPERTLLDSNRRKSLENTVKLIENILSNTAKEKLRSTNVESTGRQNVIMNVPTVENLKKIGAHKTFSDQTINDTPNTSTNDEEIKNMVTNTNSAEVDQSRDSHLIKALKRPINTNQTNEDLPNGVQSEPLNCHLLSSTNAETNKILSETSENDTDSSSDTPLIKEEIVDEETSHNVKLELVTTWTRSVNVQPFLRDTNATDRDDAGKDAVIIAGDNNITQAMEAAKNGHVPNTYYECPHCNLLFKHPKRLIIHTKWHTFGLTNEKRQELAKEKEIRRTLKREARITERLHFNEMKNKEDAEGNTHPCKDCDKVFKMKSSLKNHRQRYHPTRVRECKICHASVVGWLALREHVTAHAGAAHACPDCPKRFKYAHSLAKHKDTHLEKTHGCEQCEKKFGSKALLKMHMKCHERTARGATFRCTYCGKGFFESYNLQVHERTHRNERPFLCDICQSSFGTNSSLKRHLKVSHSSLKPFPCPTCQRCFATASTRARHGARAHGDPAALRHACARCPRRYRAHKDLAKHRARAHPDHDLDHQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00010536;
90% Identity: -
80% Identity: -