Ahol039723.1
Basic Information
- Insect
- Acleris holmiana
- Gene Symbol
- -
- Assembly
- GCA_949316455.1
- Location
- OX438790.1:8804332-8831354[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.062 7.2 8.5 1.0 1 23 236 259 236 259 0.92 2 11 0.0016 0.18 13.5 0.2 1 23 266 288 266 288 0.98 3 11 1 1.2e+02 4.7 0.6 1 21 292 312 292 315 0.82 4 11 0.56 65 5.5 1.5 1 22 322 343 322 344 0.76 5 11 4.3e-06 0.00051 21.6 0.7 2 22 349 369 349 371 0.90 6 11 2.6e-05 0.003 19.1 1.7 1 23 377 399 377 400 0.95 7 11 0.019 2.2 10.1 1.3 3 21 410 428 409 433 0.91 8 11 9.9e-06 0.0012 20.5 1.9 1 23 441 464 441 464 0.94 9 11 0.00028 0.033 15.9 3.0 1 23 469 492 469 492 0.97 10 11 2.9e-06 0.00034 22.1 3.0 2 23 500 521 499 521 0.97 11 11 1.1e-05 0.0013 20.3 1.4 1 23 527 550 527 550 0.95
Sequence Information
- Coding Sequence
- ATGGATAGTAAGAATACTTTAGTGGATAAACTGTTATGCATGGGGTGCCTCTGCGTAGGCAGGTCACTCCAGAAAATCACGGACGAAAAAATGAAGCAATACTATCTGGATGCTCTCAACGAAATACCACTCTGCGATTTGCCAAAAGCCTGTCCGACCATCTGCTGGGAGTGTGATGCTCTACTGAACAAGGCCGTATCATTCAGGGAACAAGTGAAGGACTCGTATAGGATTCTCCAGAGTTACACTAATGATAAACTCCGTGAGTGCCTCCTAACCGACGTGAGCCGGCCGCCGCGCCTGCGCGTGCGCGTGGCCAGCCCCGTCGACCTGCCCCCGGCCGGGCCGCACGACCTGGCGCTCGTCTGCGTCAAGGAGGAGCTGAAGATTGATTGGGATGACGGCAGAGATGACGACCCGATGCCACCCGCTGAACTAGAGGACCCGGTACCGGAACTAACGGATGAAAAAGTTGACAtccaaatcgttaaaaccgaaACGTTACAGTCTGTTAGGAGCAAAACGAAAAAAGTTAAGAAAACAGGGAAGCAGGTTGAAAAGATTCTGAAATTGAAGAAGAAAGCTAAGATCAAAAGACGACCCACCGAAGCGGAATCAAAGATAATAACAATAGAGCTGTCTTACGAGGAGATGTTAGCGGAGCGCGAGCGCGAAGCTACGAGAGAGAGCTATGTGAAGGCGCAGTACAAGTGCGACAGCTGCCTGATCGCGTTCAACTACAGCCGGTCGTATCAGGCGCACCGCGTGAACAAACACGCGCCGGAGCTGGGCGACTACAGCTGCCCGATCTGCAAGACCGTCATCGCCTCGGTCGACTCCTTCACCGCGCACTACAAGAGGCACACAAGGAGGTACGAATGCAGCATTTGCCGCAAGCGGACGCAAGATATGAAGGTGATGCAGCAGCACTACTACGGCGTGCACGCCATATCGCTCAAGCAGTACCAATGCAACCTCTGCGGGAAGATATCCAACTCCATCGACTCGCACCGGTACCACAAGGACTCGCACAAGGCGCGCGCGCAGTGCCCCGAGTGCGACAAGAGCTTCAGCCACCGCTCCGGCCTCATGAACCACAGGGTAGCAGTGCACGAGCTGAAGAACGCGTTCCCCTGCACGGTGTGCGAGAAGGTGTTCCGGTGGAAGGCTAGTTTGAAGCGGCACATGGAAAAACATCACGTCAAGGAGAAATCCGCGCCGGCTTACTGCGCTGCGTGCGGCGTGAGCTTCTCCTCCGTGTGCTCCTACCAGCGGCACATGAGGAACAGCCTCAAGCACGTCTCGCAGGACCAGCTCAAGTTCACGTGCGACCACTGCGGACGGCGGTTCGCCGACAAGACGAAGCTGCGCGATCATATCGAGGAGAAGCACCTCCACAAGACCTACCAGTGCCACATCTGTCACAAGTCGTCGAAGAACCGCGTGGGGCTGGACCAGCACGTGCGGAACGTGCACCGCGGCCGCCCCAACAACAAGATGTGCCACCACTGCGGGAAGGGGTACCCGACCAAAGTCCAGCTGGAGTCCCACATACGCACGCATACCGGCGAGCGGCCCTTCATATGCGAGTTCTGCCCGACCACGTTCTCGCAGCAGTCCAACCTCTACAAACACAACAGACAGGTACATCTCAACATCAAGTCGAAACGGTACCCTCTCTGCAAGAAGAAAGACGACAAAGCTCAGCCCGCAGAGGACCTTCAGAGACCTGTAGCCGTGCTGCATTTCTCGCCGCAGCGGGGGTTCGTCTTGTGA
- Protein Sequence
- MDSKNTLVDKLLCMGCLCVGRSLQKITDEKMKQYYLDALNEIPLCDLPKACPTICWECDALLNKAVSFREQVKDSYRILQSYTNDKLRECLLTDVSRPPRLRVRVASPVDLPPAGPHDLALVCVKEELKIDWDDGRDDDPMPPAELEDPVPELTDEKVDIQIVKTETLQSVRSKTKKVKKTGKQVEKILKLKKKAKIKRRPTEAESKIITIELSYEEMLAEREREATRESYVKAQYKCDSCLIAFNYSRSYQAHRVNKHAPELGDYSCPICKTVIASVDSFTAHYKRHTRRYECSICRKRTQDMKVMQQHYYGVHAISLKQYQCNLCGKISNSIDSHRYHKDSHKARAQCPECDKSFSHRSGLMNHRVAVHELKNAFPCTVCEKVFRWKASLKRHMEKHHVKEKSAPAYCAACGVSFSSVCSYQRHMRNSLKHVSQDQLKFTCDHCGRRFADKTKLRDHIEEKHLHKTYQCHICHKSSKNRVGLDQHVRNVHRGRPNNKMCHHCGKGYPTKVQLESHIRTHTGERPFICEFCPTTFSQQSNLYKHNRQVHLNIKSKRYPLCKKKDDKAQPAEDLQRPVAVLHFSPQRGFVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -