Ahol038980.1
Basic Information
- Insect
- Acleris holmiana
- Gene Symbol
- -
- Assembly
- GCA_949316455.1
- Location
- OX438789.1:9543615-9546891[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00059 0.069 14.9 0.3 2 23 79 101 78 101 0.95 2 13 0.25 29 6.6 2.8 1 21 124 144 124 146 0.94 3 13 0.036 4.2 9.3 0.7 2 23 151 172 150 172 0.96 4 13 5.2 6.1e+02 2.5 6.4 1 23 222 244 222 244 0.98 5 13 0.064 7.5 8.5 0.2 2 23 272 294 271 294 0.91 6 13 3e-05 0.0035 18.9 2.8 1 23 317 339 317 339 0.98 7 13 0.077 9 8.2 0.7 3 23 345 365 344 365 0.96 8 13 3.9e-06 0.00045 21.7 1.5 1 23 370 393 370 393 0.96 9 13 0.57 67 5.5 3.1 2 23 403 425 402 425 0.89 10 13 0.00024 0.028 16.1 1.7 1 23 431 454 431 454 0.97 11 13 4.2e-06 0.0005 21.6 1.2 2 23 459 480 458 480 0.96 12 13 1.4e-06 0.00017 23.1 4.1 1 23 486 508 486 508 0.98 13 13 0.00022 0.026 16.2 0.5 1 23 516 539 516 539 0.95
Sequence Information
- Coding Sequence
- ATGACTGTTCCCGAAAGAAAGAATGCCGCCTCCTTCATTATGTACACAACGGTCCGCCCTTTTATATTCATGGGCTCCAGTTTCAAGTGCTTTTACTGCATGGAATACCACTCGGAACTACCAGCACTGCTGCAACACACCTCAGAACACGAAATAAAGGAGAATCTTAAAGTTATTCTGGATAAATATGTCCACAAAGGCAAGAGGACGCTACAAGTAGACATTTCCAACTTAAAATGCAAAATATGCGGACTAAGTTATGATACTCTAGATAGTATAAGACAGCATTTAAAGTTAGACCATAATAAGGAGTTCTTTTCCGCAACAAATGGCATGACTGAATACAATATGGAGCTGAAAAATGGCGCTTTCATCTGTCATATTTGCGGTATTGAACTTCACACGTTCCCACTTCTGAATTCTCACATGAACTGCCATGTTGGAAAGGTGGTTTGTGAAACTTGTGGTGCTGGTTTCTTAAACCAACACTTTCTTATGAAACATAAAGAGACTCACTACAATATTAAGTTCAACTGCCTGAACCCGGCGGCTCGCCGAGGTGCCATCAGCAGTATTTGGGAAATGACAGTCTCCGAACGACAAAACGCGGCTGTCTTCCTTGAGAGCACCACGGTTCGCCCCTTCGTCTATTGCCGCTATTTTTTCAAATGCTTCTTTTGCCATGAACACTACTTTGAAATAACCACGCTACTGCAACACACATTAACCCATGAGATACCAGAAACAGACAAGATTTTGAAAGAACTTCTACCAAAGGGAAAGCGAACTATTAAAGTTGATATTTCCGAACTCAAATGCAGAATTTGCAGTGAGAAATTTAATGATTTAGACAGAATCAGAGCTCATTTAACTGAGATACATTctaaagtgtttactaaatctAGGAACGGCATGATTGCCTATAATTTAACACCTAAAGATGGTCAGTTCTCGTGTCATATATGTAGtaaaatgtttcaaactttTATACTTCTAAATCGCCATATGAACGTGCATTTCAGCAATGCAATTTGCGAGACTTGTGGAATTGGATTCATGACTCACCAACGGCTGATGCAgcataaagaaatacattttcCAGGTGGCTACCCGTgcgataaatgtaaaaaagtgtacacTACGAGTTCTAATTTGAAATATCACGTAGAGAAGACCCATGAAGGCTCATCTAGGATGCGAATGCTGCGCTGCCCACATTGCCCTGAAAGATTCTTTGAACATTACCGTAAATTACGGCATTTGAAGGACGCGCATGGAATCACATTTACTTTTGAATGCGAGACATGCAAAGCCACTTTCTCTAGCCGTCGTGCATTGACAATGCACACGAACAAATTTCACACGCAAAAAACGCAATGTCAAATTTGTAAAAAGAGCTTTAGTAGTCGCACAACTTTGAGGGCCCACATAGTATCTCATACTGGAGAGCGGAATTTCATTTGTGACTTATGTCAGAAAGCCTTTAGGCACCAGAAGAGTTTGAAGCAGCACATGAAAACACATTTGCAAAGGGAATACTATAAATTTACTTGTTCGGAATGCGGAATTGGGTTTTCTGACAAGAACAATTTTGACTACCATGTAAAAGAAACGCATCCAAAATGCCTTTTTACCTTCACTGTGCCCTAA
- Protein Sequence
- MTVPERKNAASFIMYTTVRPFIFMGSSFKCFYCMEYHSELPALLQHTSEHEIKENLKVILDKYVHKGKRTLQVDISNLKCKICGLSYDTLDSIRQHLKLDHNKEFFSATNGMTEYNMELKNGAFICHICGIELHTFPLLNSHMNCHVGKVVCETCGAGFLNQHFLMKHKETHYNIKFNCLNPAARRGAISSIWEMTVSERQNAAVFLESTTVRPFVYCRYFFKCFFCHEHYFEITTLLQHTLTHEIPETDKILKELLPKGKRTIKVDISELKCRICSEKFNDLDRIRAHLTEIHSKVFTKSRNGMIAYNLTPKDGQFSCHICSKMFQTFILLNRHMNVHFSNAICETCGIGFMTHQRLMQHKEIHFPGGYPCDKCKKVYTTSSNLKYHVEKTHEGSSRMRMLRCPHCPERFFEHYRKLRHLKDAHGITFTFECETCKATFSSRRALTMHTNKFHTQKTQCQICKKSFSSRTTLRAHIVSHTGERNFICDLCQKAFRHQKSLKQHMKTHLQREYYKFTCSECGIGFSDKNNFDYHVKETHPKCLFTFTVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -