Ahol036276.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acleris holmiana
Gene Symbol
Znf711
Assembly
GCA_949316455.1
Location
OX438786.1:5799848-5819665[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00017 0.02 16.6 1.9 1 23 208 230 208 230 0.99
2 11 0.07 8.3 8.3 0.5 1 23 237 259 237 259 0.98
3 11 0.55 65 5.5 0.1 1 23 263 286 263 286 0.92
4 11 0.00016 0.018 16.7 3.1 1 23 291 314 291 314 0.95
5 11 3e-05 0.0035 19.0 0.1 2 23 320 342 319 342 0.95
6 11 1.8e-05 0.0022 19.6 0.1 1 23 355 377 355 377 0.96
7 11 0.00011 0.013 17.1 1.5 1 22 383 404 383 408 0.94
8 11 0.00037 0.044 15.5 1.1 2 23 417 439 416 439 0.95
9 11 0.00031 0.037 15.7 0.2 1 23 445 468 445 468 0.97
10 11 1.5e-06 0.00018 23.0 0.1 1 23 477 499 477 499 0.99
11 11 0.026 3.1 9.7 0.1 1 23 505 528 505 528 0.95

Sequence Information

Coding Sequence
ATGGATTTAGATCAGTACTGTTTTGGGTGTCTGACAAAAAAGGAGGAAAACCGAATTTATAGCGTTAACTTAGAGAATTCAGCTCTAAAGATTCTAATACAGGTTGACAAATTGTTCTTATGCTACCTCTGTAAACGGGCATCGCAGCAAGCTGAACTTTTCGTACAAAACGTCCAGAGCAATCAAATGCTattagaaaatataaattttgtaaACAGTATAGAACTAGGATTTAACGAGTCAAGTAAAGAGTCTGTCACTGTGAACAGTCGGGTGAAGGTTAAACAGGAGATGAAGGAGGAAGACAACGGCTCAGATGACGAATATGTTGATGATGATAACGATTTCCAAGGACCGTTTGTGAAAGAGGAAGACTTCCCTTTAAAAGCCTTACTAAAGAAAGAAGTGGAAGTGGAGGTAATTGATCGTAAACGGCTAAAAAAAAGCTGGAAAAAGGGCAAATATAAGAAAACCAAAGGAAAACATGCTCCGCACAAGGAAATTCAAGTCAAGACGGAACCAGAAGGCGCATGCAACATCGAAACGGTATATATAACGCGGGAGCAGTGCCTAGAAGAGCGAGCGAGACAAGCGCTGGATCGGCGATACGTGGCGTCCACGTACAAATGCGAGGATTGTCTAAAAGGGTTCAATTTTAAGGAGAGTTTTGATAAACACATGGAAAAACACAATGTGAGCAATGGTGACTACGAGTGCGATGTTTGTAAGCAGCGGATGAGTTCGGAGGAGAAGTTAATCGGCCACAAAAGATATCACGAAGTCCGGTACCGCTGCGGCGCGTGCGGGCTGACGCGCGTGAGCCGCGTGACGCTGCTGGACCACTACTCCGCGTTCCACTCCGTCTGCAAGCACAGCTGCCCGCACTGCGCCAAGAGCTTCAATCGGCGTGTGTCGTGGCGCAAGCACATATCGAACGTGCACACACTCAGACGCGTGACGTGCGCGTATTGTAACAAGTCGTACGCAAACAAGGACGTGCTCAAAGCGCATATGATTGTGCAGCACCCAGTGGAGGTGTCTGCAGGCGCGGTGCAGAAGGGCTACGTGTGCGTGGAGTGCGGGAAGGCGTTCCGCGCGCCCTCGCAGCTCAAGATACACAGCACCAAGCACTCGCCCACCCGGGACTACTACTGCGTCGAGTGCGACAAaAGTTTCAAGTCGGCCTCGATACTGAAGCATCATTTGAAGACAGCATCAACTCACGTCAGCTATATAGAACTACCTCTGCCATGCGAACACTGCGACAAACGGTTTGCGATCCGCCGCGACTTAGACAGACATACAAACAGAGTGCATTTAAACATCAAGCCGTTCCAGTGCGACCAATGTGATAAGGCGTACGTGAACGGCTGGTCCCTCAACGAGCACAAGCGGCTGGTCCACGAGGGGTTCAAGAGACCCCTCAAGTACCCGTGCCCCATGTGTGACAAAGTGTTTGATCGCAACCAAGTCCTCAAAGGGCACATCCGCACTCACACTGGCGAGCGGCCGTACCAGTGCTCGCGCTGCCCGGCGCAGTTCAGCCAGGCCAGCATCCTGGGGACCCATGTGCGCCTAGTACATCTGCGGCTCACCCGCGACGGCCGGCCCAAGCCGGTGCCcgctaaataa
Protein Sequence
MDLDQYCFGCLTKKEENRIYSVNLENSALKILIQVDKLFLCYLCKRASQQAELFVQNVQSNQMLLENINFVNSIELGFNESSKESVTVNSRVKVKQEMKEEDNGSDDEYVDDDNDFQGPFVKEEDFPLKALLKKEVEVEVIDRKRLKKSWKKGKYKKTKGKHAPHKEIQVKTEPEGACNIETVYITREQCLEERARQALDRRYVASTYKCEDCLKGFNFKESFDKHMEKHNVSNGDYECDVCKQRMSSEEKLIGHKRYHEVRYRCGACGLTRVSRVTLLDHYSAFHSVCKHSCPHCAKSFNRRVSWRKHISNVHTLRRVTCAYCNKSYANKDVLKAHMIVQHPVEVSAGAVQKGYVCVECGKAFRAPSQLKIHSTKHSPTRDYYCVECDKSFKSASILKHHLKTASTHVSYIELPLPCEHCDKRFAIRRDLDRHTNRVHLNIKPFQCDQCDKAYVNGWSLNEHKRLVHEGFKRPLKYPCPMCDKVFDRNQVLKGHIRTHTGERPYQCSRCPAQFSQASILGTHVRLVHLRLTRDGRPKPVPAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01464387;
90% Identity
-
80% Identity
-