Ahol038990.2
Basic Information
- Insect
- Acleris holmiana
- Gene Symbol
- -
- Assembly
- GCA_949316455.1
- Location
- OX438789.1:9582649-9609250[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 36 0.86 1e+02 4.9 0.2 2 23 303 325 302 325 0.94 2 36 0.0016 0.19 13.5 2.4 1 23 347 369 347 369 0.96 3 36 0.047 5.5 8.9 0.8 2 23 374 396 374 396 0.96 4 36 0.14 16 7.4 0.5 2 22 402 422 401 422 0.94 5 36 0.012 1.4 10.8 1.5 1 23 429 452 429 452 0.97 6 36 0.011 1.3 10.9 1.0 1 23 459 482 459 482 0.94 7 36 7.5 8.8e+02 2.0 0.2 2 10 488 496 487 503 0.87 8 36 1.5 1.7e+02 4.2 0.2 3 22 643 662 642 662 0.89 9 36 0.017 2 10.3 2.0 1 23 699 722 699 722 0.96 10 36 0.69 81 5.2 0.3 2 23 768 790 767 790 0.93 11 36 0.012 1.4 10.8 0.1 2 23 815 837 814 837 0.95 12 36 0.014 1.6 10.6 0.6 1 23 858 880 858 880 0.94 13 36 0.00012 0.014 17.0 0.5 1 23 884 907 884 907 0.95 14 36 0.0039 0.46 12.3 0.4 3 21 913 931 912 932 0.95 15 36 7.2 8.4e+02 2.0 0.9 3 23 941 962 939 962 0.89 16 36 0.00014 0.017 16.8 2.4 1 23 969 992 969 992 0.97 17 36 0.00038 0.045 15.5 1.5 2 23 997 1018 996 1019 0.95 18 36 1.5e-06 0.00018 23.0 0.9 1 23 1025 1047 1025 1047 0.98 19 36 7.3 8.6e+02 2.0 0.1 2 23 1092 1114 1091 1114 0.90 20 36 2.5 3e+02 3.5 0.6 2 23 1139 1160 1138 1160 0.93 21 36 0.0032 0.37 12.6 0.2 1 23 1182 1204 1182 1204 0.97 22 36 0.074 8.7 8.3 2.5 1 23 1208 1231 1208 1231 0.92 23 36 0.026 3 9.7 0.4 1 21 1236 1256 1236 1257 0.96 24 36 3.3 3.9e+02 3.1 0.2 2 14 1265 1277 1265 1287 0.78 25 36 0.00017 0.02 16.5 3.0 1 23 1294 1317 1294 1317 0.97 26 36 0.00067 0.079 14.7 0.3 2 23 1322 1343 1321 1343 0.96 27 36 0.61 72 5.4 1.8 2 23 1378 1400 1377 1400 0.95 28 36 3.6 4.3e+02 3.0 0.7 3 23 1426 1447 1424 1447 0.85 29 36 0.026 3 9.7 1.0 1 23 1469 1491 1469 1491 0.97 30 36 0.04 4.7 9.1 0.2 3 23 1497 1518 1496 1518 0.89 31 36 0.069 8 8.4 1.8 1 21 1523 1543 1523 1544 0.96 32 36 4.1 4.8e+02 2.8 0.2 1 10 1551 1560 1551 1574 0.87 33 36 0.064 7.5 8.5 1.1 1 19 1581 1599 1581 1604 0.83 34 36 0.004 0.47 12.3 5.5 1 23 1608 1630 1608 1630 0.96 35 36 6.2e-05 0.0073 18.0 2.5 2 23 1637 1658 1636 1658 0.95 36 36 0.64 76 5.3 2.3 2 23 1665 1686 1664 1687 0.93
Sequence Information
- Coding Sequence
- ATGGAGACCAAAAGTTCCGATTGGCTGCGAGGGCCAAGCGGTCCTACAGTTTGCCGTTGTTGTTTTGCCGAGGGATGTTACAAAGACATTTCTACTGAATATTTCTGGATGGGCAAGAGAGAAGTGTATGACGAGATGCTCATCCAGACGTTTGACATAAATATCACCTTCGGCCGAAGCTCGGGTCCGAACAGCAACAGCCGACTGATCTGCGAGCCGTGCATCTCGCGCCTGCGTGATGCGGCGGAGTTCAAGCGGCAGGTCAAGGAGTGCGAGAGGATGTTCATGGACTACCTGGACCCTGGGCCGGCGGCGCCTCTTGAGTTAGGTGccACTCCGGAAGCGGTGGATAAGGATCCAAAAGTGGTGCAGGTGAACGTGTTCCATGTGAAGGTAGAGAAGGGAAACAGCAATGACGGCTTCGACGACGCAGGCGGCTTCGACGacaacgacgacgacgacgatgaCCTCGACGACCAACCTCTGACAAGGCTTGCCAGCAAGGTGCCTAAAAAGGAGTCGGTCGACCTGTTCGACCTCTTGGACAACGCGAAGGGAGAGAAGCGCAAGTCCACCACCAAAACCAAATCCTCACCCGCCAAAAAAGCTAAAACAAAGAAGGATGCCCCCAAAGCAACCACCAGCAAGCCCAAGCCAGAGAAGAAAAAGAAAGaGAAAAGTTTCGATCCGGCGCGAAGTAACGCCGAGGCGATACTGACTGCCGCCACGGCCTACCCATTCCGAGTCGCCGATAAGAGCATACTGTGCGTTTACTGCCTAGAGCTATACGACGATCCCGATATCTTCCGCCAACACATGGACGAAGAACACAAACGTTTCAATCTCAAAGTAGCCTTCCACAACTTACCTAGTCTAGAATTCATCAAGGCAGACATCGCAGACCTGAAATGCAGAATTTgctcattaaaatttcaaacacTCGAAGCTATAGCTGACCATCTTAAATTAGAACATAAACAGACAATAGACACAGAAGGAAAACTTGGCGTGATGCCCTATTTgctacataaaaatgaacacaTATGCGCAGTATGCGAAAAGAACTTCCCGACTCTGTTTCATTTGAATAGGCATACTATATCGCATTTTTTGGGTAATGTGTGCCACGTTTGCGGAAAAAGTTACTTGGCAACAACGGGTCTGCTTCGCCACATAAGATCGAAACATCAAGAATACCAAGTTTCCTGTAAGAGATGCCGGAAAGTATTCCCAAACATGGAAGCGAAGGAAAAACACACACGGACAGAGAAATCTTGCATGCCTTATGTATGCTCGAAATGTAACGAGAGATTCCTCGATTGGAAGTCCAGGAAGAGACACATGGAGTCCACCCACGGACAAACGAAGAGGAGTTTTCGATGCCCGGATTgcgatattaattttaatagtgAAAACTCTTATTACGAACATTTCAAGCTTCAGCATTCCAGGGAGTGCTCGTCCTGCAAACATTGCGGTTTAAAGTTTTTGTTCACGTCCCTGCTCACACAAATCGATGCGGTGAGGAGAAACGCCGAGGCGATTATAAAGTGCACAACCGCTTACCCATTCCGCGTGAATGACAAGTCGATACTTTGCGTATACTGCGGTGACTTGCACAGCGAACCTGCCCTGTTCCGACACCACATGGACACTGAACACGCCAAATTTAACTACCGCATGCCTTTTGAAAAACTACCCAAAACAGAATACGTAAAAGTAGACGTTAAGAACCTTAAATGTAGAAATTGTTCACTCGAATTACCATTAGAGCTAGCACTGACACATCTGAAAGAAGTACATTTTGTAAATGTACATGTCGAATCTCCTCTAGGCgttatgaaatttattttaaataacggCGATTGGAATTGCGCCGTTTGTCAACATGTTAGATCGAAACATGAGAACACTTACAAGGCATATTGCAGACGCTGTGGCATAGTATTCTCCTCCATGGAAGCTAAAGTGCAGCACCGAAAAACAGAAAAGAAATGCATGGCGCACTGCTGTACGTTATGTTCAGATAGATTTCCCACGTGGGAAATAAAGCAACAGCACATCTTAGATCACCATGGAATTGCAAAGAGGACGTATCAGTGCGCGGATTGTAACGTTACCTATCCCAGTCGCAGGGCGTTCAACGATCATTATAAGCTGTGCCACTCTCGCGACTGCATTGCTTGCACGCATTGCGAATTAGTTGGAGCGAGCGTGGAGGCTGCCCAGCGGAACGCGCGCCTTATATTGACTTACTCCACGGCCTATCCCTTCAGATACTCCATGCCTAGCATGCAGGTGGAGTGCTGCCTCTGCGTCGACTCGTTCGACGACCCCGGCCTCTTCAGAGCCCACATGGACTCTAAACACGCCAGCGTTGATAAATCTAGAATCCTCGCAAAGAAAATATGCGGCAGCACGCGTGTCGATATAACAAACCTACGCTGCAAGATTTGCGTGACTAATTTTACCACCATAGACACTTTAGTGGTCCATCTAAACTTAATACATCGATTGAATATTGACGTCAATCACCACGGGCTAGTGCCGTTGCGTCTGGAGAGAAATCATTTTCAGTGCCTTATTTGCTCTAAACTATTCACAGGCCTCAAACAACTTTGGAGGCATTCGGGCTCGCACTTTTCCAAATATGTCTGCGATATTTGCGGAAAGAATTTCGAAACAACGTCAGGTCTCCGTTTACACTCTAAATACAGTCATTCGACAAGTGAAATATGTAAACATTGTAAGAAGACGTTCCCCACAGCAGAAGCTAGAAAAGAACACATTAGAGCAACTAAAGCGTGCCAACCTTCTATATGCCGTATATGCAACGAACGGTTTCTTCACTCGGAGATGAAAGAGAAACACTTGGTCAGTGTCCACgggaaagaaaagaaaactttCTCATGTACAGAATGCGATAAAGTTTTCCGGTACCGGACGTTGCTGTACGTTCATTTCAAAACCACCCACACCAACGAAAACAAATGCCTGTACTGCGGAAAACAGTTTCCAACTAAACCCTCTCTCCAAGAACACGCATCGAGGCACCATACTGGAGAACGACCATTCGTTTGCAATGTATGCACCAAGACATTTGTGGACAAACAGTCGCTACAACGGCATTTGATCACCCACGATGACAGTAAAAAGTTTGCTTGTCCCGTTTGCAGTGTAGAATCGAAGAGCTTGGAGGCCGCCAGACAGAACGCGATTATCATACTGAAATATTCCTCCGCCTATCCGTTCCAGCAAACGGCTAACACTCTGCGGTGTGTTTTCTGTTTAGACGTTTACGAAGACCCACGAGAATTTAGAGAGCATATGGATTCCCAACACGCAAATAAAGACAAATCAGAAAGCGTCCCAAAAGAATCCGACCTTCTGATCCGAGTAGATATCACAGACTTGCGCTGTAAAGTCTGCGATCATAAACCAGACAATTTAGAACATCTGGCTGTACATTTAGCTGAGCATGATTTTGATATCAATATCTCCGAACAGACTGGCCTAGTGCCTTTCAAGCTCGATAGTAATCGCTTCGTCTGCGTTGTATGTGAAAAGGCTTTCCCTGGTTTCTATCAACTGTCCCGACATACTGTAACACACTTCGGAAATTTCTTCTGCGAGCTGTGCGGAAGCAGTTTCGGGACGCATTCCGGTCTTAAGTATCATGAAAAATTTACGCATTTCGCACCCAAGTTCACTTGTAGAGTCTGCATGAAATCATTCCCGACTCGAGATGAGAAGAAAGCGCACATTCGTCAAAACACGCCGTGTATGCCTGCTAAGTGTTATATTTGCAAAGAACGTTTCCCCACTTGGCAGATCAAGGAGCAACATTTGATAGAAATGCATGGCAAACCAAAAAAGACTTTTCCTTGTACTGAATGCGACAAAGTTTTTGAGCACAGATTTCAGTTGTACCAGCATTTTAAAACCATACATACCGACGATCTTATTTGTCAATATTGTAACAAAAGATTTAACGTGCGAATTACACTTAATGAACATATAGCTATGCACGAGGACTTGCTTGGATGGAGTCGGGACGCCGCTAAGCAGAACGCCCAAATTATATTGAAACACTCGACGGCGTACCCATTTCTGCAATCCTCTTCATCTTTGCGGTGCTGTTTTTGCAGAGACAATTTCAACGATCCCAATATGTTCAGGGCGCACATGGACACCGTTCATATGGGCGTGGACAGGTCCAAGTGTAACAAATCCAATTTGGATACGCAAACTCGTGTAGACATCACAAACCTTCGTTGCATTAAATGTATAAAGGTGTTCTCTTCCATAGAAACTCTAGCTAAACATCTACATGACGAGCACGAACTCAAAATAGAGTTGAGCCAAAGTTTAGGACTAGTGCCGTTGAGGCTAGAGAAAGACCGGTTCGAATGCGTTGTATGCTCTCAGAAATTCACCAGCACGACGCAAGTATCCAGACATACAGGGACCCACTATTTTAGAAACATATGCGACATTTGCGGAAAAAGGTTTGAGAGTCGAAGAGGAATTGATAGTCACGTCAAAGCACGACATACGACCAGGTCCTTTTACTGTAGGAAGTGTAAACATTCATTTCCGACACTGGAAGCTAAGAAGGAACATATGCGCCTCAATCAGTCATGCTTACCTTTTAGGTGTAGTATATGTAAAGAACGGTTTCTATTTTGGGAACGGAGAGAGGACCATTTGGTTGAAACTCATGGTAAAGAGAAGAAACTATTTCGTTGTACTGAATGCGAAAGAGTTTTTGAACGGCGCACTCTGTTATATTTTCACTTTAAAGCTGCTCACACTGAAGATCACAAGTGTACGTACTGCGAATTAACTTTTGCTACGAAACGAGACTTGAGAGAGCACACGCACCAACACACAGGGGAGAGGCCGCTAAAATGCCACGTTTGCGACAAATCTTTCACCAGAGACAAAACTTTAAAACAGCATTTAGTAATCCACGACGACAGCAAAAAGAAAGTTTGCTCAGCGTGCAGCCGGCTCttcaccgacttcaaaaagctTAGAGTTCACGTTGAGAAACATCATCCTGAAATTTATCAACAAGAGTTTGGTAGAAAACGACAATGA
- Protein Sequence
- METKSSDWLRGPSGPTVCRCCFAEGCYKDISTEYFWMGKREVYDEMLIQTFDINITFGRSSGPNSNSRLICEPCISRLRDAAEFKRQVKECERMFMDYLDPGPAAPLELGATPEAVDKDPKVVQVNVFHVKVEKGNSNDGFDDAGGFDDNDDDDDDLDDQPLTRLASKVPKKESVDLFDLLDNAKGEKRKSTTKTKSSPAKKAKTKKDAPKATTSKPKPEKKKKEKSFDPARSNAEAILTAATAYPFRVADKSILCVYCLELYDDPDIFRQHMDEEHKRFNLKVAFHNLPSLEFIKADIADLKCRICSLKFQTLEAIADHLKLEHKQTIDTEGKLGVMPYLLHKNEHICAVCEKNFPTLFHLNRHTISHFLGNVCHVCGKSYLATTGLLRHIRSKHQEYQVSCKRCRKVFPNMEAKEKHTRTEKSCMPYVCSKCNERFLDWKSRKRHMESTHGQTKRSFRCPDCDINFNSENSYYEHFKLQHSRECSSCKHCGLKFLFTSLLTQIDAVRRNAEAIIKCTTAYPFRVNDKSILCVYCGDLHSEPALFRHHMDTEHAKFNYRMPFEKLPKTEYVKVDVKNLKCRNCSLELPLELALTHLKEVHFVNVHVESPLGVMKFILNNGDWNCAVCQHVRSKHENTYKAYCRRCGIVFSSMEAKVQHRKTEKKCMAHCCTLCSDRFPTWEIKQQHILDHHGIAKRTYQCADCNVTYPSRRAFNDHYKLCHSRDCIACTHCELVGASVEAAQRNARLILTYSTAYPFRYSMPSMQVECCLCVDSFDDPGLFRAHMDSKHASVDKSRILAKKICGSTRVDITNLRCKICVTNFTTIDTLVVHLNLIHRLNIDVNHHGLVPLRLERNHFQCLICSKLFTGLKQLWRHSGSHFSKYVCDICGKNFETTSGLRLHSKYSHSTSEICKHCKKTFPTAEARKEHIRATKACQPSICRICNERFLHSEMKEKHLVSVHGKEKKTFSCTECDKVFRYRTLLYVHFKTTHTNENKCLYCGKQFPTKPSLQEHASRHHTGERPFVCNVCTKTFVDKQSLQRHLITHDDSKKFACPVCSVESKSLEAARQNAIIILKYSSAYPFQQTANTLRCVFCLDVYEDPREFREHMDSQHANKDKSESVPKESDLLIRVDITDLRCKVCDHKPDNLEHLAVHLAEHDFDINISEQTGLVPFKLDSNRFVCVVCEKAFPGFYQLSRHTVTHFGNFFCELCGSSFGTHSGLKYHEKFTHFAPKFTCRVCMKSFPTRDEKKAHIRQNTPCMPAKCYICKERFPTWQIKEQHLIEMHGKPKKTFPCTECDKVFEHRFQLYQHFKTIHTDDLICQYCNKRFNVRITLNEHIAMHEDLLGWSRDAAKQNAQIILKHSTAYPFLQSSSSLRCCFCRDNFNDPNMFRAHMDTVHMGVDRSKCNKSNLDTQTRVDITNLRCIKCIKVFSSIETLAKHLHDEHELKIELSQSLGLVPLRLEKDRFECVVCSQKFTSTTQVSRHTGTHYFRNICDICGKRFESRRGIDSHVKARHTTRSFYCRKCKHSFPTLEAKKEHMRLNQSCLPFRCSICKERFLFWERREDHLVETHGKEKKLFRCTECERVFERRTLLYFHFKAAHTEDHKCTYCELTFATKRDLREHTHQHTGERPLKCHVCDKSFTRDKTLKQHLVIHDDSKKKVCSACSRLFTDFKKLRVHVEKHHPEIYQQEFGRKRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -