Basic Information

Insect: Acleris holmiana
Gene Symbol: ham
Assembly: GCA_949316455.1
Location: OX438777.1:13418794-13446089[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.037 4.4 9.2 0.1 2 23 116 138 116 138 0.94

2 9 0.00053 0.062 15.0 0.6 1 23 145 168 145 168 0.93

3 9 1.8e-08 2.2e-06 29.1 0.1 1 23 174 197 174 197 0.96

4 9 1.6e-06 0.00019 23.0 1.7 1 23 203 225 203 225 0.95

5 9 4.7e-05 0.0055 18.3 7.1 1 23 231 253 231 253 0.99

6 9 0.0014 0.16 13.7 0.4 2 21 261 280 260 281 0.94

7 9 1.3e-08 1.6e-06 29.5 0.7 1 23 680 702 680 702 0.98

8 9 4.9e-07 5.7e-05 24.6 1.7 1 23 708 731 708 731 0.97

9 9 5.2e-06 0.00061 21.3 3.7 1 23 737 759 737 759 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.037	4.4	9.2	0.1	2	23	116	138	116	138	0.94
2	9	0.00053	0.062	15.0	0.6	1	23	145	168	145	168	0.93
3	9	1.8e-08	2.2e-06	29.1	0.1	1	23	174	197	174	197	0.96
4	9	1.6e-06	0.00019	23.0	1.7	1	23	203	225	203	225	0.95
5	9	4.7e-05	0.0055	18.3	7.1	1	23	231	253	231	253	0.99
6	9	0.0014	0.16	13.7	0.4	2	21	261	280	260	281	0.94
7	9	1.3e-08	1.6e-06	29.5	0.7	1	23	680	702	680	702	0.98
8	9	4.9e-07	5.7e-05	24.6	1.7	1	23	708	731	708	731	0.97
9	9	5.2e-06	0.00061	21.3	3.7	1	23	737	759	737	759	0.98

Sequence Information

Coding Sequence: atGCCTTCGGAAACTTTCGAGAATATTGGTCACTCTTGTCTCAAGAAGgtTCTCGGCAAGAACGGTATTAGGGGTTGGCTGGATGGGACCACCGAGAAATCGAACTGGCTGAAAATCGTGCGCTCTACCGACTACTCGCACGAGGTCAACGTGCAGCAGTTGCTGCTGGCTGGACAAGTGTGGTACAAGGTCACTCGGGACATCTTGACTGGCCAGGAGTTGCTCCTCGGGCCCAGGACTCCCCTGCCGCTGCAGGATGTGCTTACCGGAGCTGGTCGCCAAGGGTCCAGCATCTCTTCAAGCTCTGTGAAACTCGAGGAAGAGGAGCGAGAGGACACTGAGCCGCGCTGTTCCTTCTGCGACGCCCCGTTTCCAAACATCGACGCTCTCGATCGCCACCTGATACAAACGCACGCGCAGCCGGCGGCCGCGTACCACTGCGAGTTGTGCAATCGCGCATATAGCTCGCGCGCGCTACTACTGCGTCATCGTGCGCTAGCGCACACTGACATCAGGAAATACCCTTGCGAAAACTGCCCTAAGGTATTTACCGATCCTTCCAACCTGCAGCGCCACATCCGGGCGCAGCACGTCGGTGCCCGCAGCCACGCCTGCCCCGAGTGCGGCAAGACCTTCGCCACCTCCTCAGGGCTGAAGCAGCACACGCATATACATTCCAGCGTCAAGCCCTTCCAGTGCAAGGTGTGCTTTAAGTCTTATACGCAGTTTTCCAACCTCTGTCGCCACAAGCGAATGCACGTCGCATGCAGAGCCCTCGTCGAGTGCGGGAAATGCGGCAACTCTTTCAACTCGTACGCTTCCCTCACTAAACACAAGAGGTTTTGCGACACTGCCACCGCTGCCACCGTCAATTTGCGTGGACAGATGTCTCAAGGATTGCCTCAAATGCCGTCCTTACCGAACGTCGGACTGAACTCCTCAGGGAACCCGAATCCGTTTCCCTTGTACAGACCGGCCCTGCAGCTTCCGTACAACACCTTCGCGCATTACCCTGCTCTGTTCTCCGCAGCAGCAGCTGCCTGCCCTCCAGAATTCTTGAATCCACTTCTATTTAACGTCCAGGGGGCAAGACTTGCCATGGAACATGATTTGGCTATGTCAAATGCCAATATGTTGTCAAAGCAACAGGAAGGTAGATTATCTGTCAAAAGCATGGACAGCTCGACGTCTCTTGATGACATGATGAAGAAAAATAAGGATTTGGATTATGAGAACAACAAACGCGATAGCGATGGGGATAGGGCTACGCCTAAATCACACGGTTTAACAGTGAAGCAGTCTTCGCCATCGGTGGAGGAAGTGTCTTCACAGCACCGCCCATCTCCGGTAATGAACATGACGACACCGATTGTTCCATTTAATTTCGCTAGAGAGGACTTAAAACAACGCAAGTCTCCTTTCAATTTTTCACttaaacacaacaacaacaccaTACCTGCAAATAAGTCTCTTTCTCCGTATCCTACCGATTTGTCAAAAAACGATGCTAATTATGACGACAAAAATTCTGATTACTCCGATTTAGAAGTTGAAATGAAGAAAGATGATGGTGACCAGCCTCTAGATTTGTCAGTGTCACGGAAACAAAGCGACAAAGACTCCGAAGCCGAAATGGACGATCGTTCCTTTCGCAACTGCTCAGTCAAATCGTATTCACCACCTGAAAGCCCCATGGGGCGTGAGAGCAAGACTCCCGAAAACGAAACCGCGGATATCGATGTGGAGGGAGTAGAGCCAAAAAGAGAGGATTCTCCTCCGCAGCTCGTTTCACCCCCTCTGGCGTTTCCGATGCCCGTCCACCCTCAGCATAACAGCAGCCTTATCGACGCCATGTATCGCTCCAGATTTTCGTCCTTTCATTCAGCGTCGGATTCGATTTTGAACTCGTCACCGTACGTTCAGACGCCATTTAATTTTTTACCCCCTCTTCTCGGCCCGGAGGGTCCGGACAGGCAACCGAGTGCTTATGCAAAGTTTCGCGAGCTGAGCGCCGGGTCGGGAAAGCTCCGGGATCGGTACGCTTGTAAATTCTGCGGGAAGGTGTTCCCGCGCAGCGCAAACCTGACTCGCCATCTGCGGACGCACACAGGGGAACAGCCTTACAAGTGTAAGTACTGCGAGCGCTCCTTCTCGATATCCTCAAACCTGCAGCGTCACGTGAGGAACATCCACAATAAGGAAAGGCCATTTAGGTGTCCGCAGTGCGACCGCTGCTTCGGACAGCAGACGAATCTAGATCGGCACTTGAAAAAACACGACGTAGAAGGGGGGGACTCGCCTAGTTCAGCGGACACGGAGCGCGATGACTCCTACTTTGACGACATCCGCTCGTTCATGGGCAAGGTGACGTGCTCGCCGGGCGCGCGCTCGCCTCCCGCCGCGTCCCCTCACGCGCCGCACCGGCCGTCGGCGCTCGCCATCTCCACATAG
Protein Sequence: MPSETFENIGHSCLKKVLGKNGIRGWLDGTTEKSNWLKIVRSTDYSHEVNVQQLLLAGQVWYKVTRDILTGQELLLGPRTPLPLQDVLTGAGRQGSSISSSSVKLEEEEREDTEPRCSFCDAPFPNIDALDRHLIQTHAQPAAAYHCELCNRAYSSRALLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKSYTQFSNLCRHKRMHVACRALVECGKCGNSFNSYASLTKHKRFCDTATAATVNLRGQMSQGLPQMPSLPNVGLNSSGNPNPFPLYRPALQLPYNTFAHYPALFSAAAAACPPEFLNPLLFNVQGARLAMEHDLAMSNANMLSKQQEGRLSVKSMDSSTSLDDMMKKNKDLDYENNKRDSDGDRATPKSHGLTVKQSSPSVEEVSSQHRPSPVMNMTTPIVPFNFAREDLKQRKSPFNFSLKHNNNTIPANKSLSPYPTDLSKNDANYDDKNSDYSDLEVEMKKDDGDQPLDLSVSRKQSDKDSEAEMDDRSFRNCSVKSYSPPESPMGRESKTPENETADIDVEGVEPKREDSPPQLVSPPLAFPMPVHPQHNSSLIDAMYRSRFSSFHSASDSILNSSPYVQTPFNFLPPLLGPEGPDRQPSAYAKFRELSAGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPQCDRCFGQQTNLDRHLKKHDVEGGDSPSSADTERDDSYFDDIRSFMGKVTCSPGARSPPAASPHAPHRPSALAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00680859;
90% Identity: iTF_01464379;
80% Identity: -