Basic Information

Insect: Acleris holmiana
Gene Symbol: -
Assembly: GCA_949316455.1
Location: OX438776.1:14502098-14506154[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.026 3.1 9.7 4.3 1 23 139 161 139 161 0.97

2 13 1.1e-06 0.00013 23.4 2.6 1 23 167 189 167 189 0.99

3 13 0.0034 0.4 12.5 2.4 1 23 194 216 194 216 0.98

4 13 0.00016 0.019 16.7 2.2 1 23 230 252 230 252 0.99

5 13 0.00054 0.063 15.0 4.3 2 20 260 278 259 281 0.93

6 13 0.0044 0.51 12.1 0.4 1 23 287 309 287 309 0.93

7 13 4.4e-07 5.2e-05 24.7 4.1 1 23 315 337 315 337 0.98

8 13 2.5e-07 2.9e-05 25.5 1.2 1 23 343 365 343 365 0.96

9 13 3.4e-05 0.004 18.8 0.4 1 23 371 393 371 393 0.96

10 13 0.00025 0.03 16.0 2.3 1 23 399 421 399 421 0.96

11 13 2.2e-05 0.0026 19.4 3.4 1 23 427 449 427 449 0.97

12 13 4.4e-07 5.2e-05 24.7 0.9 1 23 455 477 455 477 0.99

13 13 0.00021 0.025 16.3 1.6 1 23 483 505 483 505 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.026	3.1	9.7	4.3	1	23	139	161	139	161	0.97
2	13	1.1e-06	0.00013	23.4	2.6	1	23	167	189	167	189	0.99
3	13	0.0034	0.4	12.5	2.4	1	23	194	216	194	216	0.98
4	13	0.00016	0.019	16.7	2.2	1	23	230	252	230	252	0.99
5	13	0.00054	0.063	15.0	4.3	2	20	260	278	259	281	0.93
6	13	0.0044	0.51	12.1	0.4	1	23	287	309	287	309	0.93
7	13	4.4e-07	5.2e-05	24.7	4.1	1	23	315	337	315	337	0.98
8	13	2.5e-07	2.9e-05	25.5	1.2	1	23	343	365	343	365	0.96
9	13	3.4e-05	0.004	18.8	0.4	1	23	371	393	371	393	0.96
10	13	0.00025	0.03	16.0	2.3	1	23	399	421	399	421	0.96
11	13	2.2e-05	0.0026	19.4	3.4	1	23	427	449	427	449	0.97
12	13	4.4e-07	5.2e-05	24.7	0.9	1	23	455	477	455	477	0.99
13	13	0.00021	0.025	16.3	1.6	1	23	483	505	483	505	0.98

Sequence Information

Coding Sequence: ATGGCAAGTGAAACACAAATAATTAACGTCGTTGAATGCTGCCGAACATGCATGACGGACTCTTCAAACGAAATGATTGGTATTCTCACGCCAATTTATTCTTTAACAGCGGCCGATATGATATCATCCTGTACTTCGATTAAGATAAGTAATGAAGACTCTTTACCAAAACTCATTTGTGATAGATGTTTTCACTGCTTGCAAGAATTCTATGAATTCAGGAAGCAAGCAGAGGCCATTGACATACAGCTGCATACAAAAGCAATGGAGAGTAGTATTACTGACGTAAAACTGGAAGTAAAAGATAAACCTCCCGATGACACTGACTGCAGTTTAGATGATACTGTGGATCAATATTATGATGATGTTAAAATAGAATTCAAGGAAgaacaagaaaatattgaaaCTACTCCCCATGTCTGCACTATCTGCTTAGaagtatttcaaaatgaatcCCATTTATGTGGTCATAGTAAAATGCATTTAGATAAAATCAGATTTAAGTGTGATGAATGTGATAAACAGTTTGGAAAACAATCAAAGTTAGAAAGACATAAACGCACGCATGATAAAGGTACATATGTTTGTGCTGTGTGTTCAGAAACATTTAAGTACCACACCAAATACGTAAAACACTTAATACGACACAGTCAAAGTAAACCCGAAGAACAAAATGAAAACCAAAGCTATGAATGTGATAAGTGCTCTGCTACATTTAAATCTATACATTCCCTGTCTGGCCACATGAGAAAGCACAGTTCCAAGAACCGCATACTAAGTTGTAATATATGCCAAAAAGTATTTAAGAAAGTAAGTCATTTAAAAAGACATGAGCTCTGCCATGAGAACAACAGGCCATACAAATGTCCACTTTGTCCACAATCATTTACAtcagaaataatatttaaggaacATGCAAACAAACATGCTGGAGTGAAAAATCACACTTGTCCGATTTGTTCTAAGGCGTTTTCTCACTTGTCTACTTTGAACACGCATATGAAAACACATACGAAGGAGAAGTCTTATTTGTGTCCATCTTGTGGGAAGAAGTTTGATTCCAGCACTAATTTAAACCAGCATATGAGAAGACATCTTGGATTAAAGCTGTTTGCTTGCAGTTTATGTCCTAAAAGATTTGTAAGCAAagGTGAACTGAAGTCCCATGGCACTACGCACACTGGAGAACGTGCGCACACGTGCGAGCAGTGTGGTGCTACGTTCACGAAACGCAGTTCTTTGGGCAAGCACTCGCTTCGCCATCGTGGCATCAAGCCTCACCCTTGCGATGCTTGCCCTATGAGGTTCACAAGCAAGGACCACCTGAAGCGCCATTACCGCATCCATACCGGAGAGAAGCCGTATCGCTGTACACTATGCGACCGTGCCTTCACTCAGAGCAACGACTTGGCCAAGCATCGGCGCGTGCATCTCGGGGACAAACTGTACAAATGCCTGCAGTGCTCGGAGAGTTTCAGACTTAAAACAGAGCTAAGACAACATATATCACAACACTTCGTAGAGCAACTAGCATCCGTGGTTTCTGTCGATGAAAACGTCAATAAATTAGATAAGTGTAGCGACAATTATGTGGTACCTCAGGATGTTACGAGGAACATAGTTGTGAGTAAATGTGATATGGCGAGTTAA
Protein Sequence: MASETQIINVVECCRTCMTDSSNEMIGILTPIYSLTAADMISSCTSIKISNEDSLPKLICDRCFHCLQEFYEFRKQAEAIDIQLHTKAMESSITDVKLEVKDKPPDDTDCSLDDTVDQYYDDVKIEFKEEQENIETTPHVCTICLEVFQNESHLCGHSKMHLDKIRFKCDECDKQFGKQSKLERHKRTHDKGTYVCAVCSETFKYHTKYVKHLIRHSQSKPEEQNENQSYECDKCSATFKSIHSLSGHMRKHSSKNRILSCNICQKVFKKVSHLKRHELCHENNRPYKCPLCPQSFTSEIIFKEHANKHAGVKNHTCPICSKAFSHLSTLNTHMKTHTKEKSYLCPSCGKKFDSSTNLNQHMRRHLGLKLFACSLCPKRFVSKGELKSHGTTHTGERAHTCEQCGATFTKRSSLGKHSLRHRGIKPHPCDACPMRFTSKDHLKRHYRIHTGEKPYRCTLCDRAFTQSNDLAKHRRVHLGDKLYKCLQCSESFRLKTELRQHISQHFVEQLASVVSVDENVNKLDKCSDNYVVPQDVTRNIVVSKCDMAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00010413;
90% Identity: -
80% Identity: -